miRNA display CGI


Results 21 - 40 of 265 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 33354 0.73 0.158645
Target:  5'- -aGCCggGUGGCCgCCgguggguccgccggGCCgCUGCCCCg -3'
miRNA:   3'- caCGGa-CACCGGgGG--------------CGGgGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 33232 0.73 0.158645
Target:  5'- -aGCCggGUGGCCgCCggcggguccgccggGCCgCUGCCCCg -3'
miRNA:   3'- caCGGa-CACCGGgGG--------------CGGgGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 33108 0.73 0.158645
Target:  5'- -aGCCggGUGGCCgCCggcggguucgccggGCCgCUGCCCCg -3'
miRNA:   3'- caCGGa-CACCGGgGG--------------CGGgGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 3495 0.72 0.167491
Target:  5'- -cGCgc-UGGCCCCCgccagGCCCCgGCCCCg -3'
miRNA:   3'- caCGgacACCGGGGG-----CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 700 0.72 0.167491
Target:  5'- -cGCgc-UGGCCCCCgccagGCCCCgGCCCCg -3'
miRNA:   3'- caCGgacACCGGGGG-----CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 1631 0.72 0.167491
Target:  5'- -cGCgc-UGGCCCCCgccagGCCCCgGCCCCg -3'
miRNA:   3'- caCGgacACCGGGGG-----CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 156870 0.72 0.167491
Target:  5'- -cGCCU---GCCCCCGCcugcuCCCUGCCCUc -3'
miRNA:   3'- caCGGAcacCGGGGGCG-----GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 118996 0.72 0.167491
Target:  5'- gGUGCCUcGgaGGCCCCCGCCgacgcagccuCCaGCCCUc -3'
miRNA:   3'- -CACGGA-Ca-CCGGGGGCGG----------GGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 2563 0.72 0.167491
Target:  5'- -cGCgc-UGGCCCCCgccagGCCCCgGCCCCg -3'
miRNA:   3'- caCGgacACCGGGGG-----CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 167639 0.72 0.171472
Target:  5'- -gGCUcGUGGCCUgcgCCGUCCCcagGCCCCu -3'
miRNA:   3'- caCGGaCACCGGG---GGCGGGGa--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 124171 0.72 0.171472
Target:  5'- -gGCCagcGUGGCCUCCGCCC--GCCUCg -3'
miRNA:   3'- caCGGa--CACCGGGGGCGGGgaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 141311 0.72 0.171472
Target:  5'- -aGCCUGgcUGaGCCCCCGgggUCCUGUCCCa -3'
miRNA:   3'- caCGGAC--AC-CGGGGGCg--GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 142971 0.72 0.188256
Target:  5'- aUGCCaGggGGCUUCCGCCCUaGCCCUu -3'
miRNA:   3'- cACGGaCa-CCGGGGGCGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 43808 0.71 0.192672
Target:  5'- cGUGCCUGU--CCCaCCGCUCC-GCCCUg -3'
miRNA:   3'- -CACGGACAccGGG-GGCGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 143061 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 152295 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 155373 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 146139 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 149217 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 158452 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.