miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 3734 0.69 0.270395
Target:  5'- -cGCC---GGCCuCCCGUCCCgaagGCCCUg -3'
miRNA:   3'- caCGGacaCCGG-GGGCGGGGa---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 5119 0.69 0.266851
Target:  5'- cGUGCCaccGUGGCUcugauugaucgcucaCCCGCCCUgcgagacGCCCUg -3'
miRNA:   3'- -CACGGa--CACCGG---------------GGGCGGGGa------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 6433 0.66 0.402426
Target:  5'- -gGCCaUGUGGgCCCUgggGUCCaugggGCCCCa -3'
miRNA:   3'- caCGG-ACACCgGGGG---CGGGga---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 8867 0.73 0.138519
Target:  5'- -aGCCU---GCCCCCGCCCCcagGCuCCCa -3'
miRNA:   3'- caCGGAcacCGGGGGCGGGGa--CG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 9134 0.69 0.276387
Target:  5'- -------aGGCCCCCGCCCaggcGCCCCc -3'
miRNA:   3'- cacggacaCCGGGGGCGGGga--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 10994 0.69 0.276992
Target:  5'- gGUGCCccccaucuucgagGGCCCCgGCCUCgagGCCCUc -3'
miRNA:   3'- -CACGGaca----------CCGGGGgCGGGGa--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 12334 0.67 0.379049
Target:  5'- -cGCCUcaGuCCCCuCGCCCCUggGCCUCa -3'
miRNA:   3'- caCGGAcaCcGGGG-GCGGGGA--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 12926 0.73 0.156038
Target:  5'- gGUGCCUcuggaGGCCCUgGCCCC-GCCCg -3'
miRNA:   3'- -CACGGAca---CCGGGGgCGGGGaCGGGg -5'
29153 5' -67.3 NC_006146.1 + 13177 0.66 0.443354
Target:  5'- -gGCCUGcccGGCCugCCCGgCCUcGCUCCg -3'
miRNA:   3'- caCGGACa--CCGG--GGGCgGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 13782 0.69 0.276387
Target:  5'- -gGCCUGUccUCCCCGCCUCccuccccgGCCCCc -3'
miRNA:   3'- caCGGACAccGGGGGCGGGGa-------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 13997 0.67 0.363978
Target:  5'- -aGCCUcccaGGCCCguccacUCGCCCCgaguccaGCCCCg -3'
miRNA:   3'- caCGGAca--CCGGG------GGCGGGGa------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 14169 0.66 0.418511
Target:  5'- -aGCCUGccucgaguagGuGCCCUCugaGCCCCcuuUGCCCCc -3'
miRNA:   3'- caCGGACa---------C-CGGGGG---CGGGG---ACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 15331 0.69 0.270395
Target:  5'- uGUGCCccUGgcgGGCgCCCCGCgCgaGCCCg -3'
miRNA:   3'- -CACGG--ACa--CCG-GGGGCGgGgaCGGGg -5'
29153 5' -67.3 NC_006146.1 + 15413 0.67 0.379049
Target:  5'- -cGCCUcaGuCCCCuCGCCCCUggGCCUCa -3'
miRNA:   3'- caCGGAcaCcGGGG-GCGGGGA--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 15744 0.7 0.253049
Target:  5'- -cGCCcagcaacGUGGCCCUgGCCCgCUGCUgCg -3'
miRNA:   3'- caCGGa------CACCGGGGgCGGG-GACGGgG- -5'
29153 5' -67.3 NC_006146.1 + 16003 0.73 0.156038
Target:  5'- gGUGCCUcuggaGGCCCUgGCCCC-GCCCg -3'
miRNA:   3'- -CACGGAca---CCGGGGgCGGGGaCGGGg -5'
29153 5' -67.3 NC_006146.1 + 16255 0.66 0.443354
Target:  5'- -gGCCUGcccGGCCugCCCGgCCUcGCUCCg -3'
miRNA:   3'- caCGGACa--CCGG--GGGCgGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 16860 0.69 0.276387
Target:  5'- -gGCCUGUccUCCCCGCCUCccuccccgGCCCCc -3'
miRNA:   3'- caCGGACAccGGGGGCGGGGa-------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 17075 0.67 0.363978
Target:  5'- -aGCCUcccaGGCCCguccacUCGCCCCgaguccaGCCCCg -3'
miRNA:   3'- caCGGAca--CCGGG------GGCGGGGa------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 17247 0.66 0.418511
Target:  5'- -aGCCUGccucgaguagGuGCCCUCugaGCCCCcuuUGCCCCc -3'
miRNA:   3'- caCGGACa---------C-CGGGGG---CGGGG---ACGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.