miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 207 0.68 0.320624
Target:  5'- -cGCCgGU-GCCCCCGCgacggucCCCggggcGCCCCu -3'
miRNA:   3'- caCGGaCAcCGGGGGCG-------GGGa----CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 479 0.68 0.34145
Target:  5'- -cGCCg--GGCCCCgCGggaccccCCCCUccGCCCCc -3'
miRNA:   3'- caCGGacaCCGGGG-GC-------GGGGA--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 587 0.67 0.379049
Target:  5'- -gGCCgggGgcgcGGCCCggCGCcagCCCUGCCCCc -3'
miRNA:   3'- caCGGa--Ca---CCGGGg-GCG---GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 700 0.72 0.167491
Target:  5'- -cGCgc-UGGCCCCCgccagGCCCCgGCCCCg -3'
miRNA:   3'- caCGgacACCGGGGG-----CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 938 0.69 0.270395
Target:  5'- -cGCC---GGCCuCCCGUCCCgaagGCCCUg -3'
miRNA:   3'- caCGGacaCCGG-GGGCGGGGa---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 1138 0.69 0.288061
Target:  5'- -cGCCgGU-GCCCCCGCgagggucCCCgggccGCCCCg -3'
miRNA:   3'- caCGGaCAcCGGGGGCG-------GGGa----CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 1410 0.68 0.34145
Target:  5'- -cGCCg--GGCCCCgCGggaccccCCCCUccGCCCCc -3'
miRNA:   3'- caCGGacaCCGGGG-GC-------GGGGA--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 1518 0.67 0.379049
Target:  5'- -gGCCgggGgcgcGGCCCggCGCcagCCCUGCCCCc -3'
miRNA:   3'- caCGGa--Ca---CCGGGg-GCG---GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 1631 0.72 0.167491
Target:  5'- -cGCgc-UGGCCCCCgccagGCCCCgGCCCCg -3'
miRNA:   3'- caCGgacACCGGGGG-----CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 1870 0.69 0.270395
Target:  5'- -cGCC---GGCCuCCCGUCCCgaagGCCCUg -3'
miRNA:   3'- caCGGacaCCGG-GGGCGGGGa---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 2070 0.69 0.288061
Target:  5'- -cGCCgGU-GCCCCCGCgagggucCCCgggccGCCCCg -3'
miRNA:   3'- caCGGaCAcCGGGGGCG-------GGGa----CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 2342 0.68 0.34145
Target:  5'- -cGCCg--GGCCCCgCGggaccccCCCCUccGCCCCc -3'
miRNA:   3'- caCGGacaCCGGGG-GC-------GGGGA--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 2450 0.67 0.379049
Target:  5'- -gGCCgggGgcgcGGCCCggCGCcagCCCUGCCCCc -3'
miRNA:   3'- caCGGa--Ca---CCGGGg-GCG---GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 2563 0.72 0.167491
Target:  5'- -cGCgc-UGGCCCCCgccagGCCCCgGCCCCg -3'
miRNA:   3'- caCGgacACCGGGGG-----CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 2802 0.69 0.270395
Target:  5'- -cGCC---GGCCuCCCGUCCCgaagGCCCUg -3'
miRNA:   3'- caCGGacaCCGG-GGGCGGGGa---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 3002 0.69 0.288061
Target:  5'- -cGCCgGU-GCCCCCGCgagggucCCCgggccGCCCCg -3'
miRNA:   3'- caCGGaCAcCGGGGGCG-------GGGa----CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 3141 0.68 0.307935
Target:  5'- -aGCCaUGcGcGCCCaCCcgGCCCCUGCgCCCu -3'
miRNA:   3'- caCGG-ACaC-CGGG-GG--CGGGGACG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 3274 0.68 0.34145
Target:  5'- -cGCCg--GGCCCCgCGggaccccCCCCUccGCCCCc -3'
miRNA:   3'- caCGGacaCCGGGG-GC-------GGGGA--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 3382 0.67 0.379049
Target:  5'- -gGCCgggGgcgcGGCCCggCGCcagCCCUGCCCCc -3'
miRNA:   3'- caCGGa--Ca---CCGGGg-GCG---GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 3495 0.72 0.167491
Target:  5'- -cGCgc-UGGCCCCCgccagGCCCCgGCCCCg -3'
miRNA:   3'- caCGgacACCGGGGG-----CGGGGaCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.