miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 166037 1.09 0.000304
Target:  5'- gGUGCCUGUGGCCCCCGCCCCUGCCCCu -3'
miRNA:   3'- -CACGGACACCGGGGGCGGGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 33354 0.73 0.158645
Target:  5'- -aGCCggGUGGCCgCCgguggguccgccggGCCgCUGCCCCg -3'
miRNA:   3'- caCGGa-CACCGGgGG--------------CGGgGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 141311 0.72 0.171472
Target:  5'- -aGCCUGgcUGaGCCCCCGgggUCCUGUCCCa -3'
miRNA:   3'- caCGGAC--AC-CGGGGGCg--GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 111342 0.66 0.443354
Target:  5'- -cGCC-GUGGCCCUcaucuccuccauCGCCaCgCUGCaCCCc -3'
miRNA:   3'- caCGGaCACCGGGG------------GCGG-G-GACG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 128512 0.73 0.138519
Target:  5'- -cGUCgggGUGGCCCUggggCGCCCCUcGCCCa -3'
miRNA:   3'- caCGGa--CACCGGGG----GCGGGGA-CGGGg -5'
29153 5' -67.3 NC_006146.1 + 8867 0.73 0.138519
Target:  5'- -aGCCU---GCCCCCGCCCCcagGCuCCCa -3'
miRNA:   3'- caCGGAcacCGGGGGCGGGGa--CG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 66455 0.73 0.148802
Target:  5'- cUGCCUGccgaGGgCgCCGCCCCUGUCCa -3'
miRNA:   3'- cACGGACa---CCgGgGGCGGGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 130053 0.73 0.148802
Target:  5'- -aGCCg--GGCCUCCaagagcgcCCCCUGCCCCu -3'
miRNA:   3'- caCGGacaCCGGGGGc-------GGGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 19081 0.73 0.156038
Target:  5'- gGUGCCUcuggaGGCCCUgGCCCC-GCCCg -3'
miRNA:   3'- -CACGGAca---CCGGGGgCGGGGaCGGGg -5'
29153 5' -67.3 NC_006146.1 + 33232 0.73 0.158645
Target:  5'- -aGCCggGUGGCCgCCggcggguccgccggGCCgCUGCCCCg -3'
miRNA:   3'- caCGGa-CACCGGgGG--------------CGGgGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 25237 0.73 0.156038
Target:  5'- gGUGCCUcuggaGGCCCUgGCCCC-GCCCg -3'
miRNA:   3'- -CACGGAca---CCGGGGgCGGGGaCGGGg -5'
29153 5' -67.3 NC_006146.1 + 16003 0.73 0.156038
Target:  5'- gGUGCCUcuggaGGCCCUgGCCCC-GCCCg -3'
miRNA:   3'- -CACGGAca---CCGGGGgCGGGGaCGGGg -5'
29153 5' -67.3 NC_006146.1 + 92987 0.76 0.093936
Target:  5'- --aCCUGcgaGGCCgCCCGCCCCUGCgCCu -3'
miRNA:   3'- cacGGACa--CCGG-GGGCGGGGACGgGG- -5'
29153 5' -67.3 NC_006146.1 + 28315 0.73 0.156038
Target:  5'- gGUGCCUcuggaGGCCCUgGCCCC-GCCCg -3'
miRNA:   3'- -CACGGAca---CCGGGGgCGGGGaCGGGg -5'
29153 5' -67.3 NC_006146.1 + 70621 0.75 0.108789
Target:  5'- -gGCCUcUGcuGCCUCCGCCCCauUGCCCCc -3'
miRNA:   3'- caCGGAcAC--CGGGGGCGGGG--ACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 12926 0.73 0.156038
Target:  5'- gGUGCCUcuggaGGCCCUgGCCCC-GCCCg -3'
miRNA:   3'- -CACGGAca---CCGGGGgCGGGGaCGGGg -5'
29153 5' -67.3 NC_006146.1 + 33108 0.73 0.158645
Target:  5'- -aGCCggGUGGCCgCCggcggguucgccggGCCgCUGCCCCg -3'
miRNA:   3'- caCGGa-CACCGGgGG--------------CGGgGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 156870 0.72 0.167491
Target:  5'- -cGCCU---GCCCCCGCcugcuCCCUGCCCUc -3'
miRNA:   3'- caCGGAcacCGGGGGCG-----GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 144784 0.74 0.133305
Target:  5'- gGUGCCuuuccauggaccaauUGUGGCCUCCGUgCCU-CCCCu -3'
miRNA:   3'- -CACGG---------------ACACCGGGGGCGgGGAcGGGG- -5'
29153 5' -67.3 NC_006146.1 + 44712 0.73 0.145299
Target:  5'- -gGCC-GUGGCCCCCGCUggCCgGCCUg -3'
miRNA:   3'- caCGGaCACCGGGGGCGG--GGaCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.