miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 95894 0.65 0.448422
Target:  5'- --uCCUGUacuGGCCCCgGUUCCggacucuguacugGCCCCg -3'
miRNA:   3'- cacGGACA---CCGGGGgCGGGGa------------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 152029 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 148951 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 145873 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 142795 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 32992 0.66 0.402426
Target:  5'- cUGCCcccGGaaCCCCCGgCCCUGUCCa -3'
miRNA:   3'- cACGGacaCC--GGGGGCgGGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 80739 0.66 0.402426
Target:  5'- cUGCCgc-GGCCUCUaccucggcuGCCuCCUGCUCCg -3'
miRNA:   3'- cACGGacaCCGGGGG---------CGG-GGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 6433 0.66 0.402426
Target:  5'- -gGCCaUGUGGgCCCUgggGUCCaugggGCCCCa -3'
miRNA:   3'- caCGG-ACACCgGGGG---CGGGga---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 75298 0.66 0.402426
Target:  5'- uUGCCUagcuUGGCCUUacuuacagGCCCC-GCCCCa -3'
miRNA:   3'- cACGGAc---ACCGGGGg-------CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 155107 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 158186 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 119063 0.66 0.410419
Target:  5'- -gGCCa--GGCCCCgaGCCCCccuccacgccGCCCCg -3'
miRNA:   3'- caCGGacaCCGGGGg-CGGGGa---------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 125742 0.66 0.443354
Target:  5'- -cGCCgauccgaGGCCUCCGUCCCacccaGCCCg -3'
miRNA:   3'- caCGGaca----CCGGGGGCGGGGa----CGGGg -5'
29153 5' -67.3 NC_006146.1 + 105722 0.66 0.443354
Target:  5'- -cGCCUagGGCUCCaagaGCCCCaagaGCUCCa -3'
miRNA:   3'- caCGGAcaCCGGGGg---CGGGGa---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 138948 0.66 0.43498
Target:  5'- -gGCCUaaccUGGCCCUgGCuuuggCCUUGCCCUu -3'
miRNA:   3'- caCGGAc---ACCGGGGgCG-----GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 43652 0.66 0.426698
Target:  5'- -cGCCUGgggagaggGGCCCggcucgcauUCGCUCCagGCCCUc -3'
miRNA:   3'- caCGGACa-------CCGGG---------GGCGGGGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 106259 0.66 0.426698
Target:  5'- cGUGCCccUGGCCCCgGCggaagacauccUCCUGgCCUg -3'
miRNA:   3'- -CACGGacACCGGGGgCG-----------GGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 80592 0.66 0.426698
Target:  5'- --cCCUuacuaGGCCCCUcCCCuCUGCCCCu -3'
miRNA:   3'- cacGGAca---CCGGGGGcGGG-GACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 41771 0.66 0.426698
Target:  5'- -cGCCgGaGGCCCUgCGCCCggGCgCCCg -3'
miRNA:   3'- caCGGaCaCCGGGG-GCGGGgaCG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 103851 0.66 0.426698
Target:  5'- -gGCagagGUGGUCUCCGUCCCgGCCg- -3'
miRNA:   3'- caCGga--CACCGGGGGCGGGGaCGGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.