miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 170288 0.7 0.253049
Target:  5'- uGUGCCUGgcgggggagagggGGCagggcuggcgccgggCCgCGCCCCcgGCCCCu -3'
miRNA:   3'- -CACGGACa------------CCG---------------GGgGCGGGGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 169357 0.7 0.253049
Target:  5'- uGUGCCUGgcgggggagagggGGCagggcuggcgccgggCCgCGCCCCcgGCCCCu -3'
miRNA:   3'- -CACGGACa------------CCG---------------GGgGCGGGGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 169061 0.83 0.028888
Target:  5'- uGUGCCUGUGGCaCCCGgCUgUGCCCCg -3'
miRNA:   3'- -CACGGACACCGgGGGCgGGgACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 168425 0.7 0.253049
Target:  5'- uGUGCCUGgcgggggagagggGGCagggcuggcgccgggCCgCGCCCCcgGCCCCu -3'
miRNA:   3'- -CACGGACa------------CCG---------------GGgGCGGGGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 167639 0.72 0.171472
Target:  5'- -gGCUcGUGGCCUgcgCCGUCCCcagGCCCCu -3'
miRNA:   3'- caCGGaCACCGGG---GGCGGGGa--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 167493 0.7 0.253049
Target:  5'- uGUGCCUGgcgggggagagggGGCagggcuggcgccgggCCgCGCCCCcgGCCCCu -3'
miRNA:   3'- -CACGGACa------------CCG---------------GGgGCGGGGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 166037 1.09 0.000304
Target:  5'- gGUGCCUGUGGCCCCCGCCCCUGCCCCu -3'
miRNA:   3'- -CACGGACACCGGGGGCGGGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 159722 0.67 0.394532
Target:  5'- -gGCUucaugGUGGCgCCCGCCUUUgaagcaauuucgGCCCCu -3'
miRNA:   3'- caCGGa----CACCGgGGGCGGGGA------------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 159103 0.68 0.314565
Target:  5'- --uCCUGcagGGUCCCCaGCCCCUGUgUCa -3'
miRNA:   3'- cacGGACa--CCGGGGG-CGGGGACGgGG- -5'
29153 5' -67.3 NC_006146.1 + 158452 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 158186 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 158037 0.67 0.379049
Target:  5'- -gGCCUGcccaGCCaCCCaGCCUC-GCCCCa -3'
miRNA:   3'- caCGGACac--CGG-GGG-CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 157307 0.67 0.356599
Target:  5'- -gGUCUGgacuggagGGCCCUgggagGCCCCUGUCCg -3'
miRNA:   3'- caCGGACa-------CCGGGGg----CGGGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 156870 0.72 0.167491
Target:  5'- -cGCCU---GCCCCCGCcugcuCCCUGCCCUc -3'
miRNA:   3'- caCGGAcacCGGGGGCG-----GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 156779 0.69 0.282483
Target:  5'- cUGgCUGUaGGCCgCCGCCagCaGCCCCg -3'
miRNA:   3'- cACgGACA-CCGGgGGCGGg-GaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 155851 0.66 0.425875
Target:  5'- aGUGCCUccucgcaggcccGgcgGGCCCUggccaggCGCCCCU-CCCUg -3'
miRNA:   3'- -CACGGA------------Ca--CCGGGG-------GCGGGGAcGGGG- -5'
29153 5' -67.3 NC_006146.1 + 155605 0.69 0.282483
Target:  5'- -gGCCUccGGCCCCUccucCCCCUcGCUCCg -3'
miRNA:   3'- caCGGAcaCCGGGGGc---GGGGA-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 155373 0.71 0.216134
Target:  5'- -gGCCUGaaaGGCCCCgGCgCCUGgCUCa -3'
miRNA:   3'- caCGGACa--CCGGGGgCGgGGACgGGG- -5'
29153 5' -67.3 NC_006146.1 + 155107 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 154229 0.67 0.356599
Target:  5'- -gGUCUGgacuggagGGCCCUgggagGCCCCUGUCCg -3'
miRNA:   3'- caCGGACa-------CCGGGGg----CGGGGACGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.