miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 52701 0.67 0.960914
Target:  5'- gCUCCGggcGGGAGGUca-GGGGGCGgccGGCc -3'
miRNA:   3'- -GAGGU---UUUUUCAcucCCCCCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 149798 0.69 0.915813
Target:  5'- cCUCCAGGGAGaUGGGGGccacaaacaggcuccGGGUGgugugGGCg -3'
miRNA:   3'- -GAGGUUUUUUcACUCCC---------------CCCGCa----CCG- -5'
29154 3' -53.4 NC_006146.1 + 128184 0.66 0.970621
Target:  5'- -gCCGGGAGGcGgcccAGGGGGGCGccgcGGCg -3'
miRNA:   3'- gaGGUUUUUU-Cac--UCCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 130721 0.69 0.90737
Target:  5'- -cCCGAGGAGGacGAGGaGGcGGCG-GGCu -3'
miRNA:   3'- gaGGUUUUUUCa-CUCC-CC-CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 128658 0.66 0.978698
Target:  5'- gCUCCucgcgccgGAGGGGGuCGuUGGCa -3'
miRNA:   3'- -GAGGuuuuuucaCUCCCCCcGC-ACCG- -5'
29154 3' -53.4 NC_006146.1 + 51829 0.68 0.919285
Target:  5'- -cCCGGGGcGGcgugGAGGGGGGCucggGGCc -3'
miRNA:   3'- gaGGUUUUuUCa---CUCCCCCCGca--CCG- -5'
29154 3' -53.4 NC_006146.1 + 67246 0.68 0.930227
Target:  5'- -gCCAcgGAGGcUGGGGGGauaGGCG-GGCc -3'
miRNA:   3'- gaGGUuuUUUC-ACUCCCC---CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 91178 0.66 0.978466
Target:  5'- ---uGAAGGAGaUGAGGGuGcGGCGgGGCa -3'
miRNA:   3'- gaggUUUUUUC-ACUCCC-C-CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 33569 0.66 0.97776
Target:  5'- cCUCCGGGGGucgccgcguucgcuGGUccgguuuGGGuGGGCGUGGUc -3'
miRNA:   3'- -GAGGUUUUU--------------UCAcu-----CCC-CCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 54370 0.66 0.976047
Target:  5'- ---gAAAAGAGUGAGGuGGGCcagacgauggGUGGUg -3'
miRNA:   3'- gaggUUUUUUCACUCCcCCCG----------CACCG- -5'
29154 3' -53.4 NC_006146.1 + 169574 0.66 0.975284
Target:  5'- -cCCGGGGcccgagcgcgcgucGGGUGGGgccugaGGGGGCGcGGCg -3'
miRNA:   3'- gaGGUUUU--------------UUCACUC------CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 170410 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 33827 0.66 0.967601
Target:  5'- --gCAAcGGGGGUGGGGgagggaGGGGUGUGGUc -3'
miRNA:   3'- gagGUU-UUUUCACUCC------CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33640 0.66 0.967601
Target:  5'- --gCAAcGGGGGUGGGGgagggaGGGGUGUGGUc -3'
miRNA:   3'- gagGUU-UUUUCACUCC------CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 145276 0.67 0.960914
Target:  5'- aUCUu--GGAGcUGAGGGGGGCcucGUaGGUg -3'
miRNA:   3'- gAGGuuuUUUC-ACUCCCCCCG---CA-CCG- -5'
29154 3' -53.4 NC_006146.1 + 168324 0.67 0.960914
Target:  5'- gCUCCc-GAGGGcGGGGccGGGGCcUGGCg -3'
miRNA:   3'- -GAGGuuUUUUCaCUCC--CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 33955 0.67 0.949188
Target:  5'- gUCCGcu--GGUccGGGuGGGCGUGGUc -3'
miRNA:   3'- gAGGUuuuuUCAcuCCC-CCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 94950 0.68 0.939716
Target:  5'- -gCCGcuGcGGUaGAGGGGGGUGUgcagccaGGCa -3'
miRNA:   3'- gaGGUuuUuUCA-CUCCCCCCGCA-------CCG- -5'
29154 3' -53.4 NC_006146.1 + 169479 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 63071 0.71 0.833995
Target:  5'- aCUCCAcuuGGGcGAGGcGGGGCuUGGUa -3'
miRNA:   3'- -GAGGUuuuUUCaCUCC-CCCCGcACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.