miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 51561 0.67 0.953329
Target:  5'- -aCUGGAGAugGGUGGGGaGGcGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUU--UCACUCC-CC-CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 51657 0.67 0.953329
Target:  5'- --gCAGGGAGGcgaguaagaacUGaAGGGGGGCGacggGGCg -3'
miRNA:   3'- gagGUUUUUUC-----------AC-UCCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 51829 0.68 0.919285
Target:  5'- -cCCGGGGcGGcgugGAGGGGGGCucggGGCc -3'
miRNA:   3'- gaGGUUUUuUCa---CUCCCCCCGca--CCG- -5'
29154 3' -53.4 NC_006146.1 + 52701 0.67 0.960914
Target:  5'- gCUCCGggcGGGAGGUca-GGGGGCGgccGGCc -3'
miRNA:   3'- -GAGGU---UUUUUCAcucCCCCCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 53045 0.74 0.6405
Target:  5'- -gCCGccGAGAGGUaAGGGGGGCG-GGUg -3'
miRNA:   3'- gaGGU--UUUUUCAcUCCCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 54370 0.66 0.976047
Target:  5'- ---gAAAAGAGUGAGGuGGGCcagacgauggGUGGUg -3'
miRNA:   3'- gaggUUUUUUCACUCCcCCCG----------CACCG- -5'
29154 3' -53.4 NC_006146.1 + 56242 0.67 0.964368
Target:  5'- gUCCGcgGGGGcgGAGGcGGGGcCGUccucGGCg -3'
miRNA:   3'- gAGGUuuUUUCa-CUCC-CCCC-GCA----CCG- -5'
29154 3' -53.4 NC_006146.1 + 57351 0.66 0.967288
Target:  5'- -cCCGGGugucGGUGAGGGaGGCugcggcgGUGGCg -3'
miRNA:   3'- gaGGUUUuu--UCACUCCCcCCG-------CACCG- -5'
29154 3' -53.4 NC_006146.1 + 59536 0.73 0.732277
Target:  5'- cCUCCA----GGUGGGGGugcaGCGUGGCg -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCcc--CGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 60131 0.72 0.780595
Target:  5'- -gCCGGGGGAGggaccugGuGGGGGGUGUGuGCc -3'
miRNA:   3'- gaGGUUUUUUCa------CuCCCCCCGCAC-CG- -5'
29154 3' -53.4 NC_006146.1 + 63071 0.71 0.833995
Target:  5'- aCUCCAcuuGGGcGAGGcGGGGCuUGGUa -3'
miRNA:   3'- -GAGGUuuuUUCaCUCC-CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 64216 0.69 0.915225
Target:  5'- gCUCCGGcAGGAGgcacaucUGcgccugggccggggcGGGaGGGGCGUGGCu -3'
miRNA:   3'- -GAGGUU-UUUUC-------AC---------------UCC-CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 66650 0.74 0.67147
Target:  5'- cCUCUuGAGcAAGUgcuauauccuGAGGGGGGCGgGGCa -3'
miRNA:   3'- -GAGGuUUU-UUCA----------CUCCCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 67246 0.68 0.930227
Target:  5'- -gCCAcgGAGGcUGGGGGGauaGGCG-GGCc -3'
miRNA:   3'- gaGGUuuUUUC-ACUCCCC---CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 69511 0.72 0.789888
Target:  5'- -gCCAAAGAucgucggccuguGGUGAggaauGGGGGGUGggGGCa -3'
miRNA:   3'- gaGGUUUUU------------UCACU-----CCCCCCGCa-CCG- -5'
29154 3' -53.4 NC_006146.1 + 70156 0.67 0.949188
Target:  5'- gCUCCAGAuAGAGcaUGGGGGuGaGGUGgugGGCc -3'
miRNA:   3'- -GAGGUUU-UUUC--ACUCCC-C-CCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 77826 0.67 0.960914
Target:  5'- --aCAGGAcGGcggaGGGGGGGGCGggggGGUg -3'
miRNA:   3'- gagGUUUUuUCa---CUCCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 86421 0.68 0.940191
Target:  5'- -gCCAGAAucGGU-AGGGGGGCagcugGGCu -3'
miRNA:   3'- gaGGUUUUu-UCAcUCCCCCCGca---CCG- -5'
29154 3' -53.4 NC_006146.1 + 88567 0.67 0.960914
Target:  5'- gCUCCGuaacccggauauGGAGcuGGUGGGGgcuGGGGCuguuGUGGCu -3'
miRNA:   3'- -GAGGU------------UUUU--UCACUCC---CCCCG----CACCG- -5'
29154 3' -53.4 NC_006146.1 + 90072 0.68 0.924878
Target:  5'- -cCUAGGAGgcGGUGcAGGGGGGagcaGUGGa -3'
miRNA:   3'- gaGGUUUUU--UCAC-UCCCCCCg---CACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.