miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 33955 0.67 0.949188
Target:  5'- gUCCGcu--GGUccGGGuGGGCGUGGUc -3'
miRNA:   3'- gAGGUuuuuUCAcuCCC-CCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33995 0.71 0.798127
Target:  5'- gUCCGGugcaccuGGAAGgcagGGGGGGGGuCGgGGCa -3'
miRNA:   3'- gAGGUU-------UUUUCa---CUCCCCCC-GCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 36103 0.67 0.957236
Target:  5'- -aCUAGAAGGGggacccgcugcUGGGuGGGGGuUGUGGCc -3'
miRNA:   3'- gaGGUUUUUUC-----------ACUC-CCCCC-GCACCG- -5'
29154 3' -53.4 NC_006146.1 + 39376 0.75 0.609467
Target:  5'- -cCCGGGAGGGUGAGaaaGGGGGUGguucugGGCc -3'
miRNA:   3'- gaGGUUUUUUCACUC---CCCCCGCa-----CCG- -5'
29154 3' -53.4 NC_006146.1 + 39986 0.68 0.940191
Target:  5'- aCUCCu----AGUGAGuGGGuGGCccGGCa -3'
miRNA:   3'- -GAGGuuuuuUCACUC-CCC-CCGcaCCG- -5'
29154 3' -53.4 NC_006146.1 + 40127 0.68 0.939238
Target:  5'- uUCUggGAcaccgucugGAGGGGGGC-UGGCc -3'
miRNA:   3'- gAGGuuUUuuca-----CUCCCCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 40469 0.67 0.957236
Target:  5'- -gCCugguGGGUGaAGGGGGGCagaggGGCc -3'
miRNA:   3'- gaGGuuuuUUCAC-UCCCCCCGca---CCG- -5'
29154 3' -53.4 NC_006146.1 + 41059 0.75 0.609467
Target:  5'- uUCCGAGGGcucgcucgGAcGGGGGCGUGGCg -3'
miRNA:   3'- gAGGUUUUUuca-----CUcCCCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 41120 0.73 0.722309
Target:  5'- cCUCCAcuuuAGGGUcccgGGGGaGGGGCGUGcGCu -3'
miRNA:   3'- -GAGGUuu--UUUCA----CUCC-CCCCGCAC-CG- -5'
29154 3' -53.4 NC_006146.1 + 42357 0.69 0.890445
Target:  5'- gCUCCAGGAucucccgcgccgccaGGGUGGGcGaGGGGCGccccagGGCc -3'
miRNA:   3'- -GAGGUUUU---------------UUCACUC-C-CCCCGCa-----CCG- -5'
29154 3' -53.4 NC_006146.1 + 42538 0.67 0.964368
Target:  5'- aCUUUggGAAGcaGAcGGGGGGUGggggGGCg -3'
miRNA:   3'- -GAGGuuUUUUcaCU-CCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 43626 0.76 0.578588
Target:  5'- ---aGAGGGAGUGGgcGGcGGGGCGUGGCc -3'
miRNA:   3'- gaggUUUUUUCACU--CC-CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 44302 0.73 0.702145
Target:  5'- -gCCAAAccgguAGUGGGGgcuGGGGCcGUGGCa -3'
miRNA:   3'- gaGGUUUuu---UCACUCC---CCCCG-CACCG- -5'
29154 3' -53.4 NC_006146.1 + 44763 0.67 0.956856
Target:  5'- gCUCUcggggGAGAGGGUGccgugccgggcucAGGGGGGCGcaGCg -3'
miRNA:   3'- -GAGG-----UUUUUUCAC-------------UCCCCCCGCacCG- -5'
29154 3' -53.4 NC_006146.1 + 45024 0.66 0.976047
Target:  5'- gUCCcucGAGAGUGAGGgagagaggccGGGGCc-GGCu -3'
miRNA:   3'- gAGGuu-UUUUCACUCC----------CCCCGcaCCG- -5'
29154 3' -53.4 NC_006146.1 + 47908 0.69 0.887701
Target:  5'- uCUCUGGAGAGG-GAGGacaGGGauGUGUGGCa -3'
miRNA:   3'- -GAGGUUUUUUCaCUCC---CCC--CGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 48603 0.68 0.928648
Target:  5'- -gCCAGAAGGGUGuuccAGucgucgggugccguGGGGGCG-GGCu -3'
miRNA:   3'- gaGGUUUUUUCAC----UC--------------CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 49461 0.72 0.788965
Target:  5'- uCUCCAugaccgggaugguGAGGgccgcGGUGucggccAGGGGcGGCGUGGCa -3'
miRNA:   3'- -GAGGU-------------UUUU-----UCAC------UCCCC-CCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 50166 0.68 0.919285
Target:  5'- gUCCAGGAcc---AGGGGGGCGUuugcacuugcGGCg -3'
miRNA:   3'- gAGGUUUUuucacUCCCCCCGCA----------CCG- -5'
29154 3' -53.4 NC_006146.1 + 50851 0.72 0.789888
Target:  5'- gUCCAGGcuGGUGGGGGaugagaGGCGuUGGCc -3'
miRNA:   3'- gAGGUUUuuUCACUCCCc-----CCGC-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.