miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 161713 0.72 0.771166
Target:  5'- gCUCCugGGAGAAGgcuuGGGGGuGgGUGGCa -3'
miRNA:   3'- -GAGG--UUUUUUCacu-CCCCC-CgCACCG- -5'
29154 3' -53.4 NC_006146.1 + 117809 0.72 0.779658
Target:  5'- cCUCCGGAcuAGacgGAGGGGaggaggaGGCgGUGGCg -3'
miRNA:   3'- -GAGGUUUuuUCa--CUCCCC-------CCG-CACCG- -5'
29154 3' -53.4 NC_006146.1 + 60131 0.72 0.780595
Target:  5'- -gCCGGGGGAGggaccugGuGGGGGGUGUGuGCc -3'
miRNA:   3'- gaGGUUUUUUCa------CuCCCCCCGCAC-CG- -5'
29154 3' -53.4 NC_006146.1 + 49461 0.72 0.788965
Target:  5'- uCUCCAugaccgggaugguGAGGgccgcGGUGucggccAGGGGcGGCGUGGCa -3'
miRNA:   3'- -GAGGU-------------UUUU-----UCAC------UCCCC-CCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 69511 0.72 0.789888
Target:  5'- -gCCAAAGAucgucggccuguGGUGAggaauGGGGGGUGggGGCa -3'
miRNA:   3'- gaGGUUUUU------------UCACU-----CCCCCCGCa-CCG- -5'
29154 3' -53.4 NC_006146.1 + 50851 0.72 0.789888
Target:  5'- gUCCAGGcuGGUGGGGGaugagaGGCGuUGGCc -3'
miRNA:   3'- gAGGUUUuuUCACUCCCc-----CCGC-ACCG- -5'
29154 3' -53.4 NC_006146.1 + 33995 0.71 0.798127
Target:  5'- gUCCGGugcaccuGGAAGgcagGGGGGGGGuCGgGGCa -3'
miRNA:   3'- gAGGUU-------UUUUCa---CUCCCCCC-GCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 153514 0.71 0.815983
Target:  5'- uUCUGGAGGcuGUGGauggaguGGGGGGCGUGGg -3'
miRNA:   3'- gAGGUUUUUu-CACU-------CCCCCCGCACCg -5'
29154 3' -53.4 NC_006146.1 + 63071 0.71 0.833995
Target:  5'- aCUCCAcuuGGGcGAGGcGGGGCuUGGUa -3'
miRNA:   3'- -GAGGUuuuUUCaCUCC-CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 113736 0.7 0.858276
Target:  5'- -cCCAcuGGGGUGAGGaaGGCGUGGa -3'
miRNA:   3'- gaGGUuuUUUCACUCCccCCGCACCg -5'
29154 3' -53.4 NC_006146.1 + 15476 0.7 0.86596
Target:  5'- -aCCGAGAcgcugugccugcGcGUGuGGGGGGaCGUGGUg -3'
miRNA:   3'- gaGGUUUU------------UuCACuCCCCCC-GCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33394 0.7 0.87343
Target:  5'- gCUCCG----GGUGGGGGGuGGCccgccugGGCa -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCC-CCGca-----CCG- -5'
29154 3' -53.4 NC_006146.1 + 96251 0.7 0.87343
Target:  5'- -gUUAGAAAu-UGAGGGGGGCGUG-Ca -3'
miRNA:   3'- gaGGUUUUUucACUCCCCCCGCACcG- -5'
29154 3' -53.4 NC_006146.1 + 3775 0.7 0.87343
Target:  5'- uUCUAcgcGGGGGGgggGGGGGGGGgGgGGCa -3'
miRNA:   3'- gAGGU---UUUUUCa--CUCCCCCCgCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 21973 0.69 0.887701
Target:  5'- uUCCAgccGAGAAGUGGcGGGGaagcuGGUGgagGGCa -3'
miRNA:   3'- gAGGU---UUUUUCACU-CCCC-----CCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 47908 0.69 0.887701
Target:  5'- uCUCUGGAGAGG-GAGGacaGGGauGUGUGGCa -3'
miRNA:   3'- -GAGGUUUUUUCaCUCC---CCC--CGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 150817 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 144662 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 147739 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 141584 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.