miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 167083 1.11 0.004115
Target:  5'- gCUCCAAAAAAGUGAGGGGGGCGUGGCc -3'
miRNA:   3'- -GAGGUUUUUUCACUCCCCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 24786 0.81 0.303215
Target:  5'- -aCCAGAGAcgagcuucGUGAGGGGGGUGUGGa -3'
miRNA:   3'- gaGGUUUUUu-------CACUCCCCCCGCACCg -5'
29154 3' -53.4 NC_006146.1 + 153407 0.81 0.310361
Target:  5'- -gCCAAGGGAGUucccGGGGGcGGGUGUGGCu -3'
miRNA:   3'- gaGGUUUUUUCA----CUCCC-CCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 43626 0.76 0.578588
Target:  5'- ---aGAGGGAGUGGgcGGcGGGGCGUGGCc -3'
miRNA:   3'- gaggUUUUUUCACU--CC-CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 39376 0.75 0.609467
Target:  5'- -cCCGGGAGGGUGAGaaaGGGGGUGguucugGGCc -3'
miRNA:   3'- gaGGUUUUUUCACUC---CCCCCGCa-----CCG- -5'
29154 3' -53.4 NC_006146.1 + 41059 0.75 0.609467
Target:  5'- uUCCGAGGGcucgcucgGAcGGGGGCGUGGCg -3'
miRNA:   3'- gAGGUUUUUuca-----CUcCCCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 95716 0.75 0.63429
Target:  5'- cCUCCcAGGGccuaacaaaaugcccAGUGGGGGGGGC-UGGUg -3'
miRNA:   3'- -GAGGuUUUU---------------UCACUCCCCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 53045 0.74 0.6405
Target:  5'- -gCCGccGAGAGGUaAGGGGGGCG-GGUg -3'
miRNA:   3'- gaGGU--UUUUUCAcUCCCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 66650 0.74 0.67147
Target:  5'- cCUCUuGAGcAAGUgcuauauccuGAGGGGGGCGgGGCa -3'
miRNA:   3'- -GAGGuUUU-UUCA----------CUCCCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 2439 0.74 0.68174
Target:  5'- -cCCAGGAGAG-GGGccGGGGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUUUCaCUC--CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 3371 0.74 0.68174
Target:  5'- -cCCAGGAGAG-GGGccGGGGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUUUCaCUC--CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 133064 0.74 0.68174
Target:  5'- uCUCCAGGGuGGUuccGGGuGGGGGgGUGGUc -3'
miRNA:   3'- -GAGGUUUUuUCA---CUC-CCCCCgCACCG- -5'
29154 3' -53.4 NC_006146.1 + 1507 0.74 0.68174
Target:  5'- -cCCAGGAGAG-GGGccGGGGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUUUCaCUC--CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 576 0.74 0.68174
Target:  5'- -cCCAGGAGAG-GGGccGGGGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUUUCaCUC--CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 44302 0.73 0.702145
Target:  5'- -gCCAAAccgguAGUGGGGgcuGGGGCcGUGGCa -3'
miRNA:   3'- gaGGUUUuu---UCACUCC---CCCCG-CACCG- -5'
29154 3' -53.4 NC_006146.1 + 41120 0.73 0.722309
Target:  5'- cCUCCAcuuuAGGGUcccgGGGGaGGGGCGUGcGCu -3'
miRNA:   3'- -GAGGUuu--UUUCA----CUCC-CCCCGCAC-CG- -5'
29154 3' -53.4 NC_006146.1 + 59536 0.73 0.732277
Target:  5'- cCUCCA----GGUGGGGGugcaGCGUGGCg -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCcc--CGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 27336 0.72 0.751937
Target:  5'- cCUCCAAAAAcagcgGGUGGcgcggcaaggccGGGGGGCGUcuGGa -3'
miRNA:   3'- -GAGGUUUUU-----UCACU------------CCCCCCGCA--CCg -5'
29154 3' -53.4 NC_006146.1 + 33272 0.72 0.761611
Target:  5'- gCUCCG----GGUGGGGGGuGGCccGGCu -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCC-CCGcaCCG- -5'
29154 3' -53.4 NC_006146.1 + 33148 0.72 0.761611
Target:  5'- gCUCCG----GGUGGGGGGuGGCccGGCu -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCC-CCGcaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.