miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 576 0.74 0.68174
Target:  5'- -cCCAGGAGAG-GGGccGGGGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUUUCaCUC--CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 1507 0.74 0.68174
Target:  5'- -cCCAGGAGAG-GGGccGGGGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUUUCaCUC--CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 2439 0.74 0.68174
Target:  5'- -cCCAGGAGAG-GGGccGGGGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUUUCaCUC--CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 3371 0.74 0.68174
Target:  5'- -cCCAGGAGAG-GGGccGGGGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUUUCaCUC--CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 3775 0.7 0.87343
Target:  5'- uUCUAcgcGGGGGGgggGGGGGGGGgGgGGCa -3'
miRNA:   3'- gAGGU---UUUUUCa--CUCCCCCCgCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 15476 0.7 0.86596
Target:  5'- -aCCGAGAcgcugugccugcGcGUGuGGGGGGaCGUGGUg -3'
miRNA:   3'- gaGGUUUU------------UuCACuCCCCCC-GCACCG- -5'
29154 3' -53.4 NC_006146.1 + 21335 0.66 0.967601
Target:  5'- uUCCAAGAGucauucucgGAGGGGcugccGGCG-GGCu -3'
miRNA:   3'- gAGGUUUUUuca------CUCCCC-----CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 21909 0.67 0.949188
Target:  5'- -gCCGAGGAGGaGGGGcGGGGaagcUGGCa -3'
miRNA:   3'- gaGGUUUUUUCaCUCC-CCCCgc--ACCG- -5'
29154 3' -53.4 NC_006146.1 + 21973 0.69 0.887701
Target:  5'- uUCCAgccGAGAAGUGGcGGGGaagcuGGUGgagGGCa -3'
miRNA:   3'- gAGGU---UUUUUCACU-CCCC-----CCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 24786 0.81 0.303215
Target:  5'- -aCCAGAGAcgagcuucGUGAGGGGGGUGUGGa -3'
miRNA:   3'- gaGGUUUUUu-------CACUCCCCCCGCACCg -5'
29154 3' -53.4 NC_006146.1 + 26255 0.66 0.970621
Target:  5'- -gCCA--GAGGUGGGGGcacGG-GUGGCg -3'
miRNA:   3'- gaGGUuuUUUCACUCCCc--CCgCACCG- -5'
29154 3' -53.4 NC_006146.1 + 27336 0.72 0.751937
Target:  5'- cCUCCAAAAAcagcgGGUGGcgcggcaaggccGGGGGGCGUcuGGa -3'
miRNA:   3'- -GAGGUUUUU-----UCACU------------CCCCCCGCA--CCg -5'
29154 3' -53.4 NC_006146.1 + 33148 0.72 0.761611
Target:  5'- gCUCCG----GGUGGGGGGuGGCccGGCu -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCC-CCGcaCCG- -5'
29154 3' -53.4 NC_006146.1 + 33272 0.72 0.761611
Target:  5'- gCUCCG----GGUGGGGGGuGGCccGGCu -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCC-CCGcaCCG- -5'
29154 3' -53.4 NC_006146.1 + 33394 0.7 0.87343
Target:  5'- gCUCCG----GGUGGGGGGuGGCccgccugGGCa -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCC-CCGca-----CCG- -5'
29154 3' -53.4 NC_006146.1 + 33450 0.69 0.90737
Target:  5'- gCUCCGggugcaccuGAAAGGcaaUGGGGgucgggaagggaGGGGCGUGGUc -3'
miRNA:   3'- -GAGGU---------UUUUUC---ACUCC------------CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33569 0.66 0.97776
Target:  5'- cCUCCGGGGGucgccgcguucgcuGGUccgguuuGGGuGGGCGUGGUc -3'
miRNA:   3'- -GAGGUUUUU--------------UCAcu-----CCC-CCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33640 0.66 0.967601
Target:  5'- --gCAAcGGGGGUGGGGgagggaGGGGUGUGGUc -3'
miRNA:   3'- gagGUU-UUUUCACUCC------CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33769 0.67 0.949188
Target:  5'- gUCCGcu--GGUccGGGuGGGCGUGGUc -3'
miRNA:   3'- gAGGUuuuuUCAcuCCC-CCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33827 0.66 0.967601
Target:  5'- --gCAAcGGGGGUGGGGgagggaGGGGUGUGGUc -3'
miRNA:   3'- gagGUU-UUUUCACUCC------CCCCGCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.