miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 167083 1.11 0.004115
Target:  5'- gCUCCAAAAAAGUGAGGGGGGCGUGGCc -3'
miRNA:   3'- -GAGGUUUUUUCACUCCCCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 93876 0.69 0.90105
Target:  5'- --aCAGGGAGGaaAGGGGGGCGgaauuugcGGCa -3'
miRNA:   3'- gagGUUUUUUCacUCCCCCCGCa-------CCG- -5'
29154 3' -53.4 NC_006146.1 + 130721 0.69 0.90737
Target:  5'- -cCCGAGGAGGacGAGGaGGcGGCG-GGCu -3'
miRNA:   3'- gaGGUUUUUUCa-CUCC-CC-CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 128658 0.66 0.978698
Target:  5'- gCUCCucgcgccgGAGGGGGuCGuUGGCa -3'
miRNA:   3'- -GAGGuuuuuucaCUCCCCCcGC-ACCG- -5'
29154 3' -53.4 NC_006146.1 + 53045 0.74 0.6405
Target:  5'- -gCCGccGAGAGGUaAGGGGGGCG-GGUg -3'
miRNA:   3'- gaGGU--UUUUUCAcUCCCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 133064 0.74 0.68174
Target:  5'- uCUCCAGGGuGGUuccGGGuGGGGGgGUGGUc -3'
miRNA:   3'- -GAGGUUUUuUCA---CUC-CCCCCgCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33148 0.72 0.761611
Target:  5'- gCUCCG----GGUGGGGGGuGGCccGGCu -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCC-CCGcaCCG- -5'
29154 3' -53.4 NC_006146.1 + 33272 0.72 0.761611
Target:  5'- gCUCCG----GGUGGGGGGuGGCccGGCu -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCC-CCGcaCCG- -5'
29154 3' -53.4 NC_006146.1 + 49461 0.72 0.788965
Target:  5'- uCUCCAugaccgggaugguGAGGgccgcGGUGucggccAGGGGcGGCGUGGCa -3'
miRNA:   3'- -GAGGU-------------UUUU-----UCAC------UCCCC-CCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33394 0.7 0.87343
Target:  5'- gCUCCG----GGUGGGGGGuGGCccgccugGGCa -3'
miRNA:   3'- -GAGGUuuuuUCACUCCCC-CCGca-----CCG- -5'
29154 3' -53.4 NC_006146.1 + 69511 0.72 0.789888
Target:  5'- -gCCAAAGAucgucggccuguGGUGAggaauGGGGGGUGggGGCa -3'
miRNA:   3'- gaGGUUUUU------------UCACU-----CCCCCCGCa-CCG- -5'
29154 3' -53.4 NC_006146.1 + 60131 0.72 0.780595
Target:  5'- -gCCGGGGGAGggaccugGuGGGGGGUGUGuGCc -3'
miRNA:   3'- gaGGUUUUUUCa------CuCCCCCCGCAC-CG- -5'
29154 3' -53.4 NC_006146.1 + 153407 0.81 0.310361
Target:  5'- -gCCAAGGGAGUucccGGGGGcGGGUGUGGCu -3'
miRNA:   3'- gaGGUUUUUUCA----CUCCC-CCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33995 0.71 0.798127
Target:  5'- gUCCGGugcaccuGGAAGgcagGGGGGGGGuCGgGGCa -3'
miRNA:   3'- gAGGUU-------UUUUCa---CUCCCCCC-GCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 39376 0.75 0.609467
Target:  5'- -cCCGGGAGGGUGAGaaaGGGGGUGguucugGGCc -3'
miRNA:   3'- gaGGUUUUUUCACUC---CCCCCGCa-----CCG- -5'
29154 3' -53.4 NC_006146.1 + 161713 0.72 0.771166
Target:  5'- gCUCCugGGAGAAGgcuuGGGGGuGgGUGGCa -3'
miRNA:   3'- -GAGG--UUUUUUCacu-CCCCC-CgCACCG- -5'
29154 3' -53.4 NC_006146.1 + 153514 0.71 0.815983
Target:  5'- uUCUGGAGGcuGUGGauggaguGGGGGGCGUGGg -3'
miRNA:   3'- gAGGUUUUUu-CACU-------CCCCCCGCACCg -5'
29154 3' -53.4 NC_006146.1 + 33450 0.69 0.90737
Target:  5'- gCUCCGggugcaccuGAAAGGcaaUGGGGgucgggaagggaGGGGCGUGGUc -3'
miRNA:   3'- -GAGGU---------UUUUUC---ACUCC------------CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 41059 0.75 0.609467
Target:  5'- uUCCGAGGGcucgcucgGAcGGGGGCGUGGCg -3'
miRNA:   3'- gAGGUUUUUuca-----CUcCCCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 44302 0.73 0.702145
Target:  5'- -gCCAAAccgguAGUGGGGgcuGGGGCcGUGGCa -3'
miRNA:   3'- gaGGUUUuu---UCACUCC---CCCCG-CACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.