miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 150817 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 96108 0.67 0.949188
Target:  5'- uUCUAAG--GGUGAGuGGGGGUucUGGUg -3'
miRNA:   3'- gAGGUUUuuUCACUC-CCCCCGc-ACCG- -5'
29154 3' -53.4 NC_006146.1 + 21909 0.67 0.949188
Target:  5'- -gCCGAGGAGGaGGGGcGGGGaagcUGGCa -3'
miRNA:   3'- gaGGUUUUUUCaCUCC-CCCCgc--ACCG- -5'
29154 3' -53.4 NC_006146.1 + 70156 0.67 0.949188
Target:  5'- gCUCCAGAuAGAGcaUGGGGGuGaGGUGgugGGCc -3'
miRNA:   3'- -GAGGUUU-UUUC--ACUCCC-C-CCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 86421 0.68 0.940191
Target:  5'- -gCCAGAAucGGU-AGGGGGGCagcugGGCu -3'
miRNA:   3'- gaGGUUUUu-UCAcUCCCCCCGca---CCG- -5'
29154 3' -53.4 NC_006146.1 + 64216 0.69 0.915225
Target:  5'- gCUCCGGcAGGAGgcacaucUGcgccugggccggggcGGGaGGGGCGUGGCu -3'
miRNA:   3'- -GAGGUU-UUUUC-------AC---------------UCC-CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 42357 0.69 0.890445
Target:  5'- gCUCCAGGAucucccgcgccgccaGGGUGGGcGaGGGGCGccccagGGCc -3'
miRNA:   3'- -GAGGUUUU---------------UUCACUC-C-CCCCGCa-----CCG- -5'
29154 3' -53.4 NC_006146.1 + 156973 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 153895 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 139584 0.67 0.949188
Target:  5'- -cCCAAuGAGGcUGcGGGGGGCGaGGa -3'
miRNA:   3'- gaGGUUuUUUC-ACuCCCCCCGCaCCg -5'
29154 3' -53.4 NC_006146.1 + 44763 0.67 0.956856
Target:  5'- gCUCUcggggGAGAGGGUGccgugccgggcucAGGGGGGCGcaGCg -3'
miRNA:   3'- -GAGG-----UUUUUUCAC-------------UCCCCCCGCacCG- -5'
29154 3' -53.4 NC_006146.1 + 36103 0.67 0.957236
Target:  5'- -aCUAGAAGGGggacccgcugcUGGGuGGGGGuUGUGGCc -3'
miRNA:   3'- gaGGUUUUUUC-----------ACUC-CCCCC-GCACCG- -5'
29154 3' -53.4 NC_006146.1 + 127831 0.66 0.977037
Target:  5'- cCUCCAGccuccccugGAGGGuGGGCuugGGCa -3'
miRNA:   3'- -GAGGUUuuuuca---CUCCC-CCCGca-CCG- -5'
29154 3' -53.4 NC_006146.1 + 125615 0.66 0.976047
Target:  5'- uUCCAccGAGGGUGGGGcauGGGC-UGGUg -3'
miRNA:   3'- gAGGUu-UUUUCACUCCc--CCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 116322 0.66 0.973434
Target:  5'- uCUCCccAAGAGgagGAGGGGGaaGgcGGCg -3'
miRNA:   3'- -GAGGuuUUUUCa--CUCCCCCcgCa-CCG- -5'
29154 3' -53.4 NC_006146.1 + 26255 0.66 0.970621
Target:  5'- -gCCA--GAGGUGGGGGcacGG-GUGGCg -3'
miRNA:   3'- gaGGUuuUUUCACUCCCc--CCgCACCG- -5'
29154 3' -53.4 NC_006146.1 + 21335 0.66 0.967601
Target:  5'- uUCCAAGAGucauucucgGAGGGGcugccGGCG-GGCu -3'
miRNA:   3'- gAGGUUUUUuca------CUCCCC-----CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 77826 0.67 0.960914
Target:  5'- --aCAGGAcGGcggaGGGGGGGGCGggggGGUg -3'
miRNA:   3'- gagGUUUUuUCa---CUCCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 88567 0.67 0.960914
Target:  5'- gCUCCGuaacccggauauGGAGcuGGUGGGGgcuGGGGCuguuGUGGCu -3'
miRNA:   3'- -GAGGU------------UUUU--UCACUCC---CCCCG----CACCG- -5'
29154 3' -53.4 NC_006146.1 + 40469 0.67 0.957236
Target:  5'- -gCCugguGGGUGaAGGGGGGCagaggGGCc -3'
miRNA:   3'- gaGGuuuuUUCAC-UCCCCCCGca---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.