miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 170410 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 170187 0.67 0.960914
Target:  5'- gCUCCc-GAGGGcGGGGccGGGGCcUGGCg -3'
miRNA:   3'- -GAGGuuUUUUCaCUCC--CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 169574 0.66 0.975284
Target:  5'- -cCCGGGGcccgagcgcgcgucGGGUGGGgccugaGGGGGCGcGGCg -3'
miRNA:   3'- gaGGUUUU--------------UUCACUC------CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 169479 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 169256 0.67 0.960914
Target:  5'- gCUCCc-GAGGGcGGGGccGGGGCcUGGCg -3'
miRNA:   3'- -GAGGuuUUUUCaCUCC--CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 168547 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 168324 0.67 0.960914
Target:  5'- gCUCCc-GAGGGcGGGGccGGGGCcUGGCg -3'
miRNA:   3'- -GAGGuuUUUUCaCUCC--CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 167709 0.66 0.975284
Target:  5'- -cCCGGGGcccgagcgcgcgucGGGUGGGgccugaGGGGGCGcGGCg -3'
miRNA:   3'- gaGGUUUU--------------UUCACUC------CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 167615 0.66 0.978466
Target:  5'- -gCCucGGGGGcgGAGGGGGGgGUcccgcggggcccGGCg -3'
miRNA:   3'- gaGGuuUUUUCa-CUCCCCCCgCA------------CCG- -5'
29154 3' -53.4 NC_006146.1 + 167392 0.67 0.960914
Target:  5'- gCUCCc-GAGGGcGGGGccGGGGCcUGGCg -3'
miRNA:   3'- -GAGGuuUUUUCaCUCC--CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 167083 1.11 0.004115
Target:  5'- gCUCCAAAAAAGUGAGGGGGGCGUGGCc -3'
miRNA:   3'- -GAGGUUUUUUCACUCCCCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 162103 0.66 0.970621
Target:  5'- uUCCGcgguugGGAAAGUGugcacuGGGGGGCcgucccacgGUGGg -3'
miRNA:   3'- gAGGU------UUUUUCACu-----CCCCCCG---------CACCg -5'
29154 3' -53.4 NC_006146.1 + 161713 0.72 0.771166
Target:  5'- gCUCCugGGAGAAGgcuuGGGGGuGgGUGGCa -3'
miRNA:   3'- -GAGG--UUUUUUCacu-CCCCC-CgCACCG- -5'
29154 3' -53.4 NC_006146.1 + 156973 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 153895 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 153514 0.71 0.815983
Target:  5'- uUCUGGAGGcuGUGGauggaguGGGGGGCGUGGg -3'
miRNA:   3'- gAGGUUUUUu-CACU-------CCCCCCGCACCg -5'
29154 3' -53.4 NC_006146.1 + 153407 0.81 0.310361
Target:  5'- -gCCAAGGGAGUucccGGGGGcGGGUGUGGCu -3'
miRNA:   3'- gaGGUUUUUUCA----CUCCC-CCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 150817 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 149798 0.69 0.915813
Target:  5'- cCUCCAGGGAGaUGGGGGccacaaacaggcuccGGGUGgugugGGCg -3'
miRNA:   3'- -GAGGUUUUUUcACUCCC---------------CCCGCa----CCG- -5'
29154 3' -53.4 NC_006146.1 + 147739 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.