miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 145276 0.67 0.960914
Target:  5'- aUCUu--GGAGcUGAGGGGGGCcucGUaGGUg -3'
miRNA:   3'- gAGGuuuUUUC-ACUCCCCCCG---CA-CCG- -5'
29154 3' -53.4 NC_006146.1 + 144662 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 141584 0.69 0.887701
Target:  5'- cCUCgGGGAGGGagagagGAGGGGgaGGCG-GGCg -3'
miRNA:   3'- -GAGgUUUUUUCa-----CUCCCC--CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 139584 0.67 0.949188
Target:  5'- -cCCAAuGAGGcUGcGGGGGGCGaGGa -3'
miRNA:   3'- gaGGUUuUUUC-ACuCCCCCCGCaCCg -5'
29154 3' -53.4 NC_006146.1 + 133064 0.74 0.68174
Target:  5'- uCUCCAGGGuGGUuccGGGuGGGGGgGUGGUc -3'
miRNA:   3'- -GAGGUUUUuUCA---CUC-CCCCCgCACCG- -5'
29154 3' -53.4 NC_006146.1 + 130721 0.69 0.90737
Target:  5'- -cCCGAGGAGGacGAGGaGGcGGCG-GGCu -3'
miRNA:   3'- gaGGUUUUUUCa-CUCC-CC-CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 128658 0.66 0.978698
Target:  5'- gCUCCucgcgccgGAGGGGGuCGuUGGCa -3'
miRNA:   3'- -GAGGuuuuuucaCUCCCCCcGC-ACCG- -5'
29154 3' -53.4 NC_006146.1 + 128184 0.66 0.970621
Target:  5'- -gCCGGGAGGcGgcccAGGGGGGCGccgcGGCg -3'
miRNA:   3'- gaGGUUUUUU-Cac--UCCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 127831 0.66 0.977037
Target:  5'- cCUCCAGccuccccugGAGGGuGGGCuugGGCa -3'
miRNA:   3'- -GAGGUUuuuuca---CUCCC-CCCGca-CCG- -5'
29154 3' -53.4 NC_006146.1 + 125996 0.68 0.935331
Target:  5'- gCUgCGAGGcuuGG-GAGuGGGGGCGgugGGCu -3'
miRNA:   3'- -GAgGUUUUu--UCaCUC-CCCCCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 125615 0.66 0.976047
Target:  5'- uUCCAccGAGGGUGGGGcauGGGC-UGGUg -3'
miRNA:   3'- gAGGUu-UUUUCACUCCc--CCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 122754 0.66 0.978466
Target:  5'- -cCCuacGAGGGGUacGAGcGGGGGC-UGGCc -3'
miRNA:   3'- gaGGu--UUUUUCA--CUC-CCCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 117809 0.72 0.779658
Target:  5'- cCUCCGGAcuAGacgGAGGGGaggaggaGGCgGUGGCg -3'
miRNA:   3'- -GAGGUUUuuUCa--CUCCCC-------CCG-CACCG- -5'
29154 3' -53.4 NC_006146.1 + 116322 0.66 0.973434
Target:  5'- uCUCCccAAGAGgagGAGGGGGaaGgcGGCg -3'
miRNA:   3'- -GAGGuuUUUUCa--CUCCCCCcgCa-CCG- -5'
29154 3' -53.4 NC_006146.1 + 113736 0.7 0.858276
Target:  5'- -cCCAcuGGGGUGAGGaaGGCGUGGa -3'
miRNA:   3'- gaGGUuuUUUCACUCCccCCGCACCg -5'
29154 3' -53.4 NC_006146.1 + 99390 0.68 0.930227
Target:  5'- -cCCAGGAgcGAGUcggccAGGGGGGUGccGGCa -3'
miRNA:   3'- gaGGUUUU--UUCAc----UCCCCCCGCa-CCG- -5'
29154 3' -53.4 NC_006146.1 + 96251 0.7 0.87343
Target:  5'- -gUUAGAAAu-UGAGGGGGGCGUG-Ca -3'
miRNA:   3'- gaGGUUUUUucACUCCCCCCGCACcG- -5'
29154 3' -53.4 NC_006146.1 + 96108 0.67 0.949188
Target:  5'- uUCUAAG--GGUGAGuGGGGGUucUGGUg -3'
miRNA:   3'- gAGGUUUuuUCACUC-CCCCCGc-ACCG- -5'
29154 3' -53.4 NC_006146.1 + 95716 0.75 0.63429
Target:  5'- cCUCCcAGGGccuaacaaaaugcccAGUGGGGGGGGC-UGGUg -3'
miRNA:   3'- -GAGGuUUUU---------------UCACUCCCCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 94950 0.68 0.939716
Target:  5'- -gCCGcuGcGGUaGAGGGGGGUGUgcagccaGGCa -3'
miRNA:   3'- gaGGUuuUuUCA-CUCCCCCCGCA-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.