miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 33640 0.66 0.967601
Target:  5'- --gCAAcGGGGGUGGGGgagggaGGGGUGUGGUc -3'
miRNA:   3'- gagGUU-UUUUCACUCC------CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 57351 0.66 0.967288
Target:  5'- -cCCGGGugucGGUGAGGGaGGCugcggcgGUGGCg -3'
miRNA:   3'- gaGGUUUuu--UCACUCCCcCCG-------CACCG- -5'
29154 3' -53.4 NC_006146.1 + 42538 0.67 0.964368
Target:  5'- aCUUUggGAAGcaGAcGGGGGGUGggggGGCg -3'
miRNA:   3'- -GAGGuuUUUUcaCU-CCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 56242 0.67 0.964368
Target:  5'- gUCCGcgGGGGcgGAGGcGGGGcCGUccucGGCg -3'
miRNA:   3'- gAGGUuuUUUCa-CUCC-CCCC-GCA----CCG- -5'
29154 3' -53.4 NC_006146.1 + 168324 0.67 0.960914
Target:  5'- gCUCCc-GAGGGcGGGGccGGGGCcUGGCg -3'
miRNA:   3'- -GAGGuuUUUUCaCUCC--CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 169256 0.67 0.960914
Target:  5'- gCUCCc-GAGGGcGGGGccGGGGCcUGGCg -3'
miRNA:   3'- -GAGGuuUUUUCaCUCC--CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 170187 0.67 0.960914
Target:  5'- gCUCCc-GAGGGcGGGGccGGGGCcUGGCg -3'
miRNA:   3'- -GAGGuuUUUUCaCUCC--CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 77826 0.67 0.960914
Target:  5'- --aCAGGAcGGcggaGGGGGGGGCGggggGGUg -3'
miRNA:   3'- gagGUUUUuUCa---CUCCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 52701 0.67 0.960914
Target:  5'- gCUCCGggcGGGAGGUca-GGGGGCGgccGGCc -3'
miRNA:   3'- -GAGGU---UUUUUCAcucCCCCCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 167392 0.67 0.960914
Target:  5'- gCUCCc-GAGGGcGGGGccGGGGCcUGGCg -3'
miRNA:   3'- -GAGGuuUUUUCaCUCC--CCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 145276 0.67 0.960914
Target:  5'- aUCUu--GGAGcUGAGGGGGGCcucGUaGGUg -3'
miRNA:   3'- gAGGuuuUUUC-ACUCCCCCCG---CA-CCG- -5'
29154 3' -53.4 NC_006146.1 + 88567 0.67 0.960914
Target:  5'- gCUCCGuaacccggauauGGAGcuGGUGGGGgcuGGGGCuguuGUGGCu -3'
miRNA:   3'- -GAGGU------------UUUU--UCACUCC---CCCCG----CACCG- -5'
29154 3' -53.4 NC_006146.1 + 36103 0.67 0.957236
Target:  5'- -aCUAGAAGGGggacccgcugcUGGGuGGGGGuUGUGGCc -3'
miRNA:   3'- gaGGUUUUUUC-----------ACUC-CCCCC-GCACCG- -5'
29154 3' -53.4 NC_006146.1 + 40469 0.67 0.957236
Target:  5'- -gCCugguGGGUGaAGGGGGGCagaggGGCc -3'
miRNA:   3'- gaGGuuuuUUCAC-UCCCCCCGca---CCG- -5'
29154 3' -53.4 NC_006146.1 + 44763 0.67 0.956856
Target:  5'- gCUCUcggggGAGAGGGUGccgugccgggcucAGGGGGGCGcaGCg -3'
miRNA:   3'- -GAGG-----UUUUUUCAC-------------UCCCCCCGCacCG- -5'
29154 3' -53.4 NC_006146.1 + 51657 0.67 0.953329
Target:  5'- --gCAGGGAGGcgaguaagaacUGaAGGGGGGCGacggGGCg -3'
miRNA:   3'- gagGUUUUUUC-----------AC-UCCCCCCGCa---CCG- -5'
29154 3' -53.4 NC_006146.1 + 51561 0.67 0.953329
Target:  5'- -aCUGGAGAugGGUGGGGaGGcGGCGcGGCc -3'
miRNA:   3'- gaGGUUUUU--UCACUCC-CC-CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 96108 0.67 0.949188
Target:  5'- uUCUAAG--GGUGAGuGGGGGUucUGGUg -3'
miRNA:   3'- gAGGUUUuuUCACUC-CCCCCGc-ACCG- -5'
29154 3' -53.4 NC_006146.1 + 21909 0.67 0.949188
Target:  5'- -gCCGAGGAGGaGGGGcGGGGaagcUGGCa -3'
miRNA:   3'- gaGGUUUUUUCaCUCC-CCCCgc--ACCG- -5'
29154 3' -53.4 NC_006146.1 + 70156 0.67 0.949188
Target:  5'- gCUCCAGAuAGAGcaUGGGGGuGaGGUGgugGGCc -3'
miRNA:   3'- -GAGGUUU-UUUC--ACUCCC-C-CCGCa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.