miRNA display CGI


Results 41 - 60 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 3' -53.4 NC_006146.1 + 70156 0.67 0.949188
Target:  5'- gCUCCAGAuAGAGcaUGGGGGuGaGGUGgugGGCc -3'
miRNA:   3'- -GAGGUUU-UUUC--ACUCCC-C-CCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 21909 0.67 0.949188
Target:  5'- -gCCGAGGAGGaGGGGcGGGGaagcUGGCa -3'
miRNA:   3'- gaGGUUUUUUCaCUCC-CCCCgc--ACCG- -5'
29154 3' -53.4 NC_006146.1 + 96108 0.67 0.949188
Target:  5'- uUCUAAG--GGUGAGuGGGGGUucUGGUg -3'
miRNA:   3'- gAGGUUUuuUCACUC-CCCCCGc-ACCG- -5'
29154 3' -53.4 NC_006146.1 + 86421 0.68 0.940191
Target:  5'- -gCCAGAAucGGU-AGGGGGGCagcugGGCu -3'
miRNA:   3'- gaGGUUUUu-UCAcUCCCCCCGca---CCG- -5'
29154 3' -53.4 NC_006146.1 + 39986 0.68 0.940191
Target:  5'- aCUCCu----AGUGAGuGGGuGGCccGGCa -3'
miRNA:   3'- -GAGGuuuuuUCACUC-CCC-CCGcaCCG- -5'
29154 3' -53.4 NC_006146.1 + 94950 0.68 0.939716
Target:  5'- -gCCGcuGcGGUaGAGGGGGGUGUgcagccaGGCa -3'
miRNA:   3'- gaGGUuuUuUCA-CUCCCCCCGCA-------CCG- -5'
29154 3' -53.4 NC_006146.1 + 40127 0.68 0.939238
Target:  5'- uUCUggGAcaccgucugGAGGGGGGC-UGGCc -3'
miRNA:   3'- gAGGuuUUuuca-----CUCCCCCCGcACCG- -5'
29154 3' -53.4 NC_006146.1 + 125996 0.68 0.935331
Target:  5'- gCUgCGAGGcuuGG-GAGuGGGGGCGgugGGCu -3'
miRNA:   3'- -GAgGUUUUu--UCaCUC-CCCCCGCa--CCG- -5'
29154 3' -53.4 NC_006146.1 + 67246 0.68 0.930227
Target:  5'- -gCCAcgGAGGcUGGGGGGauaGGCG-GGCc -3'
miRNA:   3'- gaGGUuuUUUC-ACUCCCC---CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 99390 0.68 0.930227
Target:  5'- -cCCAGGAgcGAGUcggccAGGGGGGUGccGGCa -3'
miRNA:   3'- gaGGUUUU--UUCAc----UCCCCCCGCa-CCG- -5'
29154 3' -53.4 NC_006146.1 + 48603 0.68 0.928648
Target:  5'- -gCCAGAAGGGUGuuccAGucgucgggugccguGGGGGCG-GGCu -3'
miRNA:   3'- gaGGUUUUUUCAC----UC--------------CCCCCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 90072 0.68 0.924878
Target:  5'- -cCUAGGAGgcGGUGcAGGGGGGagcaGUGGa -3'
miRNA:   3'- gaGGUUUUU--UCAC-UCCCCCCg---CACCg -5'
29154 3' -53.4 NC_006146.1 + 51829 0.68 0.919285
Target:  5'- -cCCGGGGcGGcgugGAGGGGGGCucggGGCc -3'
miRNA:   3'- gaGGUUUUuUCa---CUCCCCCCGca--CCG- -5'
29154 3' -53.4 NC_006146.1 + 50166 0.68 0.919285
Target:  5'- gUCCAGGAcc---AGGGGGGCGUuugcacuugcGGCg -3'
miRNA:   3'- gAGGUUUUuucacUCCCCCCGCA----------CCG- -5'
29154 3' -53.4 NC_006146.1 + 149798 0.69 0.915813
Target:  5'- cCUCCAGGGAGaUGGGGGccacaaacaggcuccGGGUGgugugGGCg -3'
miRNA:   3'- -GAGGUUUUUUcACUCCC---------------CCCGCa----CCG- -5'
29154 3' -53.4 NC_006146.1 + 64216 0.69 0.915225
Target:  5'- gCUCCGGcAGGAGgcacaucUGcgccugggccggggcGGGaGGGGCGUGGCu -3'
miRNA:   3'- -GAGGUU-UUUUC-------AC---------------UCC-CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 33450 0.69 0.90737
Target:  5'- gCUCCGggugcaccuGAAAGGcaaUGGGGgucgggaagggaGGGGCGUGGUc -3'
miRNA:   3'- -GAGGU---------UUUUUC---ACUCC------------CCCCGCACCG- -5'
29154 3' -53.4 NC_006146.1 + 130721 0.69 0.90737
Target:  5'- -cCCGAGGAGGacGAGGaGGcGGCG-GGCu -3'
miRNA:   3'- gaGGUUUUUUCa-CUCC-CC-CCGCaCCG- -5'
29154 3' -53.4 NC_006146.1 + 93876 0.69 0.90105
Target:  5'- --aCAGGGAGGaaAGGGGGGCGgaauuugcGGCa -3'
miRNA:   3'- gagGUUUUUUCacUCCCCCCGCa-------CCG- -5'
29154 3' -53.4 NC_006146.1 + 42357 0.69 0.890445
Target:  5'- gCUCCAGGAucucccgcgccgccaGGGUGGGcGaGGGGCGccccagGGCc -3'
miRNA:   3'- -GAGGUUUU---------------UUCACUC-C-CCCCGCa-----CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.