miRNA display CGI


Results 41 - 60 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 2779 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1847 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 915 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 131518 0.67 0.163675
Target:  5'- -gGCCCagaaccaCCCCCUUUCUCaCCCUCCCGg -3'
miRNA:   3'- caCGGGg------GGGGGGGGGGG-GGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 131033 0.67 0.163675
Target:  5'- -aGCCUCagCCUCCUCCCCCgggcacacagCCCCCgCCGg -3'
miRNA:   3'- caCGGGG--GGGGGGGGGGG----------GGGGG-GGC- -5'
29154 5' -75.3 NC_006146.1 + 31308 0.67 0.163675
Target:  5'- -gGCCUUCUCCUCCUCgCCCCCCgCa -3'
miRNA:   3'- caCGGGGGGGGGGGGGgGGGGGGgGc -5'
29154 5' -75.3 NC_006146.1 + 144717 0.67 0.163675
Target:  5'- -gGCCgCCCCCUCCgaccuaauCCCCUCCaggccgcuuaagCCCCCGu -3'
miRNA:   3'- caCGG-GGGGGGGG--------GGGGGGG------------GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 54159 0.68 0.16007
Target:  5'- cGUGCCCUCCUCCUCgUCCUCCUCUUu -3'
miRNA:   3'- -CACGGGGGGGGGGGgGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 130979 0.68 0.16007
Target:  5'- -cGCCCagauaCUUCCCCCaCCCUCCUCCGu -3'
miRNA:   3'- caCGGGg----GGGGGGGGgGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 103530 0.68 0.16007
Target:  5'- -aGCCCCCCUCCCCgUacucgugggaCCCggaCCCCGa -3'
miRNA:   3'- caCGGGGGGGGGGGgGg---------GGGg--GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 40178 0.68 0.16007
Target:  5'- -aGCCCgCCgCCCUCCUCgUCCUCCUCGg -3'
miRNA:   3'- caCGGG-GG-GGGGGGGGgGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 113850 0.68 0.156536
Target:  5'- -gGCCCCCUCCCgCCUCaaCCCUggcggcuucgCCCCGg -3'
miRNA:   3'- caCGGGGGGGGGgGGGG--GGGG----------GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 31263 0.68 0.156536
Target:  5'- -gGCCUCCUCCUCCUCaacacaugCCUCCCCCa -3'
miRNA:   3'- caCGGGGGGGGGGGGGg-------GGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 34924 0.68 0.153072
Target:  5'- uUGCCUggCCCaUCCCCCaCCCCagcaCCCCGg -3'
miRNA:   3'- cACGGG--GGGgGGGGGG-GGGGg---GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 33871 0.68 0.153072
Target:  5'- -gGCCCCCaCCCggCCUCCUCCCCggggugugCCCGg -3'
miRNA:   3'- caCGGGGG-GGGg-GGGGGGGGGG--------GGGC- -5'
29154 5' -75.3 NC_006146.1 + 129830 0.68 0.153072
Target:  5'- cUGUCCCuggCCUCCCUCCaCCCCgaggCCCCCa -3'
miRNA:   3'- cACGGGG---GGGGGGGGG-GGGG----GGGGGc -5'
29154 5' -75.3 NC_006146.1 + 2074 0.68 0.149679
Target:  5'- gGUGCCCCCgcgaggguCCCCgggCCgCCCCggggCUCCCCCGc -3'
miRNA:   3'- -CACGGGGG--------GGGG---GG-GGGG----GGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3006 0.68 0.149679
Target:  5'- gGUGCCCCCgcgaggguCCCCgggCCgCCCCggggCUCCCCCGc -3'
miRNA:   3'- -CACGGGGG--------GGGG---GG-GGGG----GGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 46376 0.68 0.149679
Target:  5'- -aGCUCCCCCaggCCCCCgUCCCUCgCCa -3'
miRNA:   3'- caCGGGGGGGg--GGGGGgGGGGGG-GGc -5'
29154 5' -75.3 NC_006146.1 + 128023 0.68 0.149679
Target:  5'- cGUGCCCCCCUUCgCCUCCCaCCaguggaaCCUGc -3'
miRNA:   3'- -CACGGGGGGGGGgGGGGGG-GGg------GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.