miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 85331 0.66 0.199534
Target:  5'- cUGCCUCCUgCCaCCCCaCgUgCCCCCGa -3'
miRNA:   3'- cACGGGGGGgGG-GGGG-GgGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 134670 0.66 0.199534
Target:  5'- -aGCCgCCCUgCCUCCUCCCCggccggcuugcgCUCCCGg -3'
miRNA:   3'- caCGG-GGGGgGGGGGGGGGG------------GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 28936 0.66 0.199101
Target:  5'- -aGCCCCgCCCCgCCCgCCCggccagagacucuCCCUCGc -3'
miRNA:   3'- caCGGGGgGGGGgGGGgGGG-------------GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 110428 0.66 0.195235
Target:  5'- -gGCCCCCCggCCUCUCaCCgCUCCCCGc -3'
miRNA:   3'- caCGGGGGGg-GGGGGG-GGgGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 20945 0.67 0.186878
Target:  5'- -gGCCCCCaCUCCCacgccugggcgCCCCUCaaCCCCGa -3'
miRNA:   3'- caCGGGGG-GGGGG-----------GGGGGGggGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 165256 0.67 0.186878
Target:  5'- gGUGCUCgUCCCCCUgUCCCCCgCCa- -3'
miRNA:   3'- -CACGGGgGGGGGGGgGGGGGGgGGgc -5'
29154 5' -75.3 NC_006146.1 + 54517 0.67 0.186878
Target:  5'- -gGCCCCgCUCCCUCCUCCUCUUCUu -3'
miRNA:   3'- caCGGGGgGGGGGGGGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 33058 0.67 0.182819
Target:  5'- -cGCCCaCCCaCCCCgagCCCCCCugCCUUCCa -3'
miRNA:   3'- caCGGG-GGG-GGGG---GGGGGG--GGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 8867 0.67 0.182819
Target:  5'- -aGCCUgCCCCCgCCCCCaggCUCCCa -3'
miRNA:   3'- caCGGGgGGGGGgGGGGGgg-GGGGGc -5'
29154 5' -75.3 NC_006146.1 + 125950 0.67 0.182819
Target:  5'- -aGUCCCCCggggCCUCCCCgCgCCCCUGg -3'
miRNA:   3'- caCGGGGGGg---GGGGGGGgGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 151970 0.67 0.182819
Target:  5'- aUGCCCUUCCCgUCCUCguuaCCCCCCaCCa -3'
miRNA:   3'- cACGGGGGGGGgGGGGG----GGGGGG-GGc -5'
29154 5' -75.3 NC_006146.1 + 32992 0.67 0.174934
Target:  5'- cUGCCCCCggaaCCCCCggCCCuguccacggggaCCCCCUgCCGg -3'
miRNA:   3'- cACGGGGG----GGGGG--GGG------------GGGGGGgGGC- -5'
29154 5' -75.3 NC_006146.1 + 31753 0.67 0.174548
Target:  5'- -cGCCCCCCCgggggacgggagCCCCCguucggcccacagCCCCCaauugacaCCCCa -3'
miRNA:   3'- caCGGGGGGG------------GGGGG-------------GGGGGg-------GGGGc -5'
29154 5' -75.3 NC_006146.1 + 162978 0.67 0.171107
Target:  5'- -cGCCCCUuuCCCgggUCCCCCUUCUCCUCGg -3'
miRNA:   3'- caCGGGGG--GGG---GGGGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 54547 0.67 0.171107
Target:  5'- uUGCCCCUCUCgCCUCCUUCCgUCCCu -3'
miRNA:   3'- cACGGGGGGGG-GGGGGGGGGgGGGGc -5'
29154 5' -75.3 NC_006146.1 + 138753 0.67 0.167354
Target:  5'- uUGCCUgagCCCaUCCCCCaCCCCagcaCCCCGg -3'
miRNA:   3'- cACGGG---GGGgGGGGGG-GGGGg---GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 133236 0.67 0.167354
Target:  5'- uUGCCCCCagCCCCCCUaCCCUCaacaCCa -3'
miRNA:   3'- cACGGGGGg-GGGGGGGgGGGGGg---GGc -5'
29154 5' -75.3 NC_006146.1 + 99938 0.67 0.167354
Target:  5'- -cGCaCCCCCgCUCCCgCCUCCUCCGc -3'
miRNA:   3'- caCGgGGGGGgGGGGGgGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 123992 0.67 0.167354
Target:  5'- cGUGCUCCUCUCCCUUCUCCgUCaCCCGc -3'
miRNA:   3'- -CACGGGGGGGGGGGGGGGGgGG-GGGC- -5'
29154 5' -75.3 NC_006146.1 + 2779 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.