miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 26236 0.78 0.02701
Target:  5'- -cGCCUCCCCCUCCUcuCUCCCUCCCCGa -3'
miRNA:   3'- caCGGGGGGGGGGGG--GGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 29314 0.78 0.02701
Target:  5'- -cGCCUCCCCCUCCUcuCUCCCUCCCCGa -3'
miRNA:   3'- caCGGGGGGGGGGGG--GGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 29041 0.78 0.027667
Target:  5'- -aGCCUCUCCCCUCCCUCCUCCCCUc -3'
miRNA:   3'- caCGGGGGGGGGGGGGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 13652 0.78 0.027667
Target:  5'- -aGCCUCUCCCCUCCCUCCUCCCCUc -3'
miRNA:   3'- caCGGGGGGGGGGGGGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 19808 0.78 0.027667
Target:  5'- -aGCCUCUCCCCUCCCUCCUCCCCUc -3'
miRNA:   3'- caCGGGGGGGGGGGGGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 25963 0.78 0.027667
Target:  5'- -aGCCUCUCCCCUCCCUCCUCCCCUc -3'
miRNA:   3'- caCGGGGGGGGGGGGGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 16730 0.78 0.027667
Target:  5'- -aGCCUCUCCCCUCCCUCCUCCCCUc -3'
miRNA:   3'- caCGGGGGGGGGGGGGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 22886 0.78 0.027667
Target:  5'- -aGCCUCUCCCCUCCCUCCUCCCCUc -3'
miRNA:   3'- caCGGGGGGGGGGGGGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 55855 0.77 0.03344
Target:  5'- -cGCCCCCUUCCCCuccuccuccuacuCCCCCUCCCCUGc -3'
miRNA:   3'- caCGGGGGGGGGGG-------------GGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 136893 0.76 0.038693
Target:  5'- cUGCCCCgaCCCCCCCCCUgCCUUCCa -3'
miRNA:   3'- cACGGGGg-GGGGGGGGGGgGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 37938 0.75 0.040975
Target:  5'- -cGCCCCCCgaggaCCCagagauaauccaccaCCCCCCCCCUCCGc -3'
miRNA:   3'- caCGGGGGGg----GGG---------------GGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 137255 0.75 0.041565
Target:  5'- -gGaCCacaCCCCUCCCUCCCCCaCCCCCGu -3'
miRNA:   3'- caC-GGg--GGGGGGGGGGGGGG-GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 137068 0.75 0.041565
Target:  5'- -gGaCCacaCCCCUCCCUCCCCCaCCCCCGu -3'
miRNA:   3'- caC-GGg--GGGGGGGGGGGGGG-GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 13782 0.75 0.046822
Target:  5'- -gGCCUguCCUCCCCgCCUCCCUCCCCGg -3'
miRNA:   3'- caCGGG--GGGGGGGgGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 16860 0.75 0.046822
Target:  5'- -gGCCUguCCUCCCCgCCUCCCUCCCCGg -3'
miRNA:   3'- caCGGG--GGGGGGGgGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 26093 0.75 0.046822
Target:  5'- -gGCCUguCCUCCCCgCCUCCCUCCCCGg -3'
miRNA:   3'- caCGGG--GGGGGGGgGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 23015 0.75 0.046822
Target:  5'- -gGCCUguCCUCCCCgCCUCCCUCCCCGg -3'
miRNA:   3'- caCGGG--GGGGGGGgGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 29171 0.75 0.046822
Target:  5'- -gGCCUguCCUCCCCgCCUCCCUCCCCGg -3'
miRNA:   3'- caCGGG--GGGGGGGgGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 137687 0.74 0.049102
Target:  5'- -aGCCCCaucccggcUCCCCCUCCggCCUCCCCCCGg -3'
miRNA:   3'- caCGGGG--------GGGGGGGGG--GGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 19938 0.74 0.052726
Target:  5'- -gGCCUgUCCUCCCCgCCUCCCUCCCGg -3'
miRNA:   3'- caCGGGgGGGGGGGG-GGGGGGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.