miRNA display CGI


Results 21 - 40 of 200 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 14018 0.66 0.227092
Target:  5'- -cGCCCCgaguccagCCCCgUCCaCCCUgUCCCCCGc -3'
miRNA:   3'- caCGGGG--------GGGG-GGG-GGGGgGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 160177 0.66 0.217565
Target:  5'- uGUGCCCUCCCCaCUUCUCUUCCCguuaaCCGu -3'
miRNA:   3'- -CACGGGGGGGG-GGGGGGGGGGGg----GGC- -5'
29154 5' -75.3 NC_006146.1 + 119660 0.66 0.222762
Target:  5'- -aGCCCCCUCaagcggcuacuccaaCUCCUCagCCCCCCCa -3'
miRNA:   3'- caCGGGGGGGg--------------GGGGGGg-GGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 5156 0.66 0.227092
Target:  5'- --uUCCCaUCCCCCUCCCUgaCCCCCGc -3'
miRNA:   3'- cacGGGG-GGGGGGGGGGGggGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 165256 0.67 0.186878
Target:  5'- gGUGCUCgUCCCCCUgUCCCCCgCCa- -3'
miRNA:   3'- -CACGGGgGGGGGGGgGGGGGGgGGgc -5'
29154 5' -75.3 NC_006146.1 + 8867 0.67 0.182819
Target:  5'- -aGCCUgCCCCCgCCCCCaggCUCCCa -3'
miRNA:   3'- caCGGGgGGGGGgGGGGGgg-GGGGGc -5'
29154 5' -75.3 NC_006146.1 + 131033 0.67 0.163675
Target:  5'- -aGCCUCagCCUCCUCCCCCgggcacacagCCCCCgCCGg -3'
miRNA:   3'- caCGGGG--GGGGGGGGGGG----------GGGGG-GGC- -5'
29154 5' -75.3 NC_006146.1 + 151970 0.67 0.182819
Target:  5'- aUGCCCUUCCCgUCCUCguuaCCCCCCaCCa -3'
miRNA:   3'- cACGGGGGGGGgGGGGG----GGGGGG-GGc -5'
29154 5' -75.3 NC_006146.1 + 54547 0.67 0.171107
Target:  5'- uUGCCCCUCUCgCCUCCUUCCgUCCCu -3'
miRNA:   3'- cACGGGGGGGG-GGGGGGGGGgGGGGc -5'
29154 5' -75.3 NC_006146.1 + 1847 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 123992 0.67 0.167354
Target:  5'- cGUGCUCCUCUCCCUUCUCCgUCaCCCGc -3'
miRNA:   3'- -CACGGGGGGGGGGGGGGGGgGG-GGGC- -5'
29154 5' -75.3 NC_006146.1 + 2779 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3711 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 31753 0.67 0.174548
Target:  5'- -cGCCCCCCCgggggacgggagCCCCCguucggcccacagCCCCCaauugacaCCCCa -3'
miRNA:   3'- caCGGGGGGG------------GGGGG-------------GGGGGg-------GGGGc -5'
29154 5' -75.3 NC_006146.1 + 32992 0.67 0.174934
Target:  5'- cUGCCCCCggaaCCCCCggCCCuguccacggggaCCCCCUgCCGg -3'
miRNA:   3'- cACGGGGG----GGGGG--GGG------------GGGGGGgGGC- -5'
29154 5' -75.3 NC_006146.1 + 125950 0.67 0.182819
Target:  5'- -aGUCCCCCggggCCUCCCCgCgCCCCUGg -3'
miRNA:   3'- caCGGGGGGg---GGGGGGGgGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 33058 0.67 0.182819
Target:  5'- -cGCCCaCCCaCCCCgagCCCCCCugCCUUCCa -3'
miRNA:   3'- caCGGG-GGG-GGGG---GGGGGG--GGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 915 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 31308 0.67 0.163675
Target:  5'- -gGCCUUCUCCUCCUCgCCCCCCgCa -3'
miRNA:   3'- caCGGGGGGGGGGGGGgGGGGGGgGc -5'
29154 5' -75.3 NC_006146.1 + 144717 0.67 0.163675
Target:  5'- -gGCCgCCCCCUCCgaccuaauCCCCUCCaggccgcuuaagCCCCCGu -3'
miRNA:   3'- caCGG-GGGGGGGG--------GGGGGGG------------GGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.