miRNA display CGI


Results 21 - 40 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 2533 0.73 0.065223
Target:  5'- aUGCCCgCCCgaCCCCCCgCCCCgggaCCCCGc -3'
miRNA:   3'- cACGGG-GGGg-GGGGGG-GGGGg---GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 2586 0.71 0.094802
Target:  5'- -gGCCCCgCCCUcgggagCCCCCUCagCCCCCGg -3'
miRNA:   3'- caCGGGGgGGGG------GGGGGGGg-GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 2658 0.73 0.066777
Target:  5'- -cGCCCCgCCggCCCCCCCUgcaggcgccggCCCCUCCCGc -3'
miRNA:   3'- caCGGGG-GG--GGGGGGGG-----------GGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 2779 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3006 0.68 0.149679
Target:  5'- gGUGCCCCCgcgaggguCCCCgggCCgCCCCggggCUCCCCCGc -3'
miRNA:   3'- -CACGGGGG--------GGGG---GG-GGGG----GGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3220 0.7 0.102555
Target:  5'- -aGCCCCCCgCUCgCCCCUCgggucgcgggacacgCCCCCGg -3'
miRNA:   3'- caCGGGGGGgGGGgGGGGGG---------------GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3279 0.8 0.018371
Target:  5'- -gGCCCCgcgggaCCCCCCCCUCCgCCCCCGa -3'
miRNA:   3'- caCGGGGg-----GGGGGGGGGGGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3409 0.73 0.05935
Target:  5'- cUGCCCCCUCUCCCCCgCCaggcacaCCCUCCu -3'
miRNA:   3'- cACGGGGGGGGGGGGG-GGg------GGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 3465 0.73 0.065223
Target:  5'- aUGCCCgCCCgaCCCCCCgCCCCgggaCCCCGc -3'
miRNA:   3'- cACGGG-GGGg-GGGGGG-GGGGg---GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3518 0.71 0.094802
Target:  5'- -gGCCCCgCCCUcgggagCCCCCUCagCCCCCGg -3'
miRNA:   3'- caCGGGGgGGGG------GGGGGGGg-GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3590 0.73 0.066777
Target:  5'- -cGCCCCgCCggCCCCCCCUgcaggcgccggCCCCUCCCGc -3'
miRNA:   3'- caCGGGG-GG--GGGGGGGG-----------GGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3711 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 4033 0.78 0.026368
Target:  5'- -cGCCCUCCgCUCCCCCCUCCCgCCGg -3'
miRNA:   3'- caCGGGGGGgGGGGGGGGGGGGgGGC- -5'
29154 5' -75.3 NC_006146.1 + 4179 0.69 0.133718
Target:  5'- aUGCCCauuggcucaaCCCCUCacaCCCCCCUCCCa -3'
miRNA:   3'- cACGGGg---------GGGGGGgg-GGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 4215 0.72 0.070652
Target:  5'- uUGCCCCgucuCCCCCCugccaggccacaccgCUCCCCCUUCCCGg -3'
miRNA:   3'- cACGGGG----GGGGGG---------------GGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 4770 0.72 0.075095
Target:  5'- -aGUCCCUCCCCCUCCgUCUCCUCCCu -3'
miRNA:   3'- caCGGGGGGGGGGGGG-GGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 5156 0.66 0.227092
Target:  5'- --uUCCCaUCCCCCUCCCUgaCCCCCGc -3'
miRNA:   3'- cacGGGG-GGGGGGGGGGGggGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 8867 0.67 0.182819
Target:  5'- -aGCCUgCCCCCgCCCCCaggCUCCCa -3'
miRNA:   3'- caCGGGgGGGGGgGGGGGgg-GGGGGc -5'
29154 5' -75.3 NC_006146.1 + 9135 0.69 0.120433
Target:  5'- -gGCCCCCgCCCaggcgCCCCCUCggaccucagccgccaCCCCCGg -3'
miRNA:   3'- caCGGGGGgGGGg----GGGGGGG---------------GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 12536 0.71 0.088425
Target:  5'- cUGCCUUCCCUCCCUCUcugUCCUCCCCGc -3'
miRNA:   3'- cACGGGGGGGGGGGGGG---GGGGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.