miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 211 0.71 0.090504
Target:  5'- gGUGCCCCCgcgacgguCCCCggggcgCCCCUggCCUCCCCCGc -3'
miRNA:   3'- -CACGGGGG--------GGGG------GGGGG--GGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 425 0.7 0.102555
Target:  5'- -aGCCCCCCgCUCgCCCCUCgggucgcgggacacgCCCCCGg -3'
miRNA:   3'- caCGGGGGGgGGGgGGGGGG---------------GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 484 0.8 0.018371
Target:  5'- -gGCCCCgcgggaCCCCCCCCUCCgCCCCCGa -3'
miRNA:   3'- caCGGGGg-----GGGGGGGGGGGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 614 0.73 0.05935
Target:  5'- cUGCCCCCUCUCCCCCgCCaggcacaCCCUCCu -3'
miRNA:   3'- cACGGGGGGGGGGGGG-GGg------GGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 670 0.73 0.065223
Target:  5'- aUGCCCgCCCgaCCCCCCgCCCCgggaCCCCGc -3'
miRNA:   3'- cACGGG-GGGg-GGGGGG-GGGGg---GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 723 0.71 0.094802
Target:  5'- -gGCCCCgCCCUcgggagCCCCCUCagCCCCCGg -3'
miRNA:   3'- caCGGGGgGGGG------GGGGGGGg-GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 795 0.73 0.065223
Target:  5'- -cGCCCCgCCggCCCCCCCUgcggcgccggCCCCUCCCGc -3'
miRNA:   3'- caCGGGG-GG--GGGGGGGG----------GGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 915 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1142 0.68 0.149679
Target:  5'- gGUGCCCCCgcgaggguCCCCgggCCgCCCCggggCUCCCCCGc -3'
miRNA:   3'- -CACGGGGG--------GGGG---GG-GGGG----GGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1356 0.7 0.102555
Target:  5'- -aGCCCCCCgCUCgCCCCUCgggucgcgggacacgCCCCCGg -3'
miRNA:   3'- caCGGGGGGgGGGgGGGGGG---------------GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1415 0.8 0.018371
Target:  5'- -gGCCCCgcgggaCCCCCCCCUCCgCCCCCGa -3'
miRNA:   3'- caCGGGGg-----GGGGGGGGGGGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1545 0.73 0.05935
Target:  5'- cUGCCCCCUCUCCCCCgCCaggcacaCCCUCCu -3'
miRNA:   3'- cACGGGGGGGGGGGGG-GGg------GGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 1601 0.73 0.065223
Target:  5'- aUGCCCgCCCgaCCCCCCgCCCCgggaCCCCGc -3'
miRNA:   3'- cACGGG-GGGg-GGGGGG-GGGGg---GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1654 0.71 0.094802
Target:  5'- -gGCCCCgCCCUcgggagCCCCCUCagCCCCCGg -3'
miRNA:   3'- caCGGGGgGGGG------GGGGGGGg-GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1726 0.73 0.066777
Target:  5'- -cGCCCCgCCggCCCCCCCUgcaggcgccggCCCCUCCCGc -3'
miRNA:   3'- caCGGGG-GG--GGGGGGGG-----------GGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1847 0.67 0.166983
Target:  5'- -cGCCCCCCgggaCCCCgggcgcgcgccggCCUCCCgUCCCGa -3'
miRNA:   3'- caCGGGGGGg---GGGG-------------GGGGGGgGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 2074 0.68 0.149679
Target:  5'- gGUGCCCCCgcgaggguCCCCgggCCgCCCCggggCUCCCCCGc -3'
miRNA:   3'- -CACGGGGG--------GGGG---GG-GGGG----GGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 2288 0.7 0.102555
Target:  5'- -aGCCCCCCgCUCgCCCCUCgggucgcgggacacgCCCCCGg -3'
miRNA:   3'- caCGGGGGGgGGGgGGGGGG---------------GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 2347 0.8 0.018371
Target:  5'- -gGCCCCgcgggaCCCCCCCCUCCgCCCCCGa -3'
miRNA:   3'- caCGGGGg-----GGGGGGGGGGGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 2477 0.73 0.05935
Target:  5'- cUGCCCCCUCUCCCCCgCCaggcacaCCCUCCu -3'
miRNA:   3'- cACGGGGGGGGGGGGG-GGg------GGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.