miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 170892 0.8 0.016679
Target:  5'- -gGCCCCUCaaCCCCCCCUCCCCCCUGu -3'
miRNA:   3'- caCGGGGGGg-GGGGGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 170792 0.68 0.149343
Target:  5'- -aGCCCCUCUCCgaaaucaCCCUugcgugacgaagCCCCUCCCCGa -3'
miRNA:   3'- caCGGGGGGGGG-------GGGG------------GGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 167663 0.7 0.113998
Target:  5'- -gGCCCCUauCCCCCCCUUCacaUCCUCCGg -3'
miRNA:   3'- caCGGGGG--GGGGGGGGGGg--GGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 167119 1.06 0.000156
Target:  5'- cGUGCCCCCCCCCCCCCCCCCCCCCCGc -3'
miRNA:   3'- -CACGGGGGGGGGGGGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 166046 0.74 0.055284
Target:  5'- -gGCCCCCgCCCCUgCCCCuauuCCCCUCCa -3'
miRNA:   3'- caCGGGGG-GGGGGgGGGG----GGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 165256 0.67 0.186878
Target:  5'- gGUGCUCgUCCCCCUgUCCCCCgCCa- -3'
miRNA:   3'- -CACGGGgGGGGGGGgGGGGGGgGGgc -5'
29154 5' -75.3 NC_006146.1 + 162978 0.67 0.171107
Target:  5'- -cGCCCCUuuCCCgggUCCCCCUUCUCCUCGg -3'
miRNA:   3'- caCGGGGG--GGG---GGGGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 162645 0.72 0.069992
Target:  5'- -cGCUCCCUCCCCCUCCCUaCUCUCCa -3'
miRNA:   3'- caCGGGGGGGGGGGGGGGG-GGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 160177 0.66 0.217565
Target:  5'- uGUGCCCUCCCCaCUUCUCUUCCCguuaaCCGu -3'
miRNA:   3'- -CACGGGGGGGG-GGGGGGGGGGGg----GGC- -5'
29154 5' -75.3 NC_006146.1 + 156873 0.72 0.071655
Target:  5'- cUGCCCCCgCCUgCUCCCUgCCCUCCGc -3'
miRNA:   3'- cACGGGGG-GGGgGGGGGGgGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 156090 0.69 0.116639
Target:  5'- cGUGCCCUCCUCCggcccggccggCCUCUCCUUCCCCu -3'
miRNA:   3'- -CACGGGGGGGGG-----------GGGGGGGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 155605 0.72 0.076874
Target:  5'- -gGCCUCCggCCCCUCCUCCCCCUCGc -3'
miRNA:   3'- caCGGGGGggGGGGGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 151970 0.67 0.182819
Target:  5'- aUGCCCUUCCCgUCCUCguuaCCCCCCaCCa -3'
miRNA:   3'- cACGGGGGGGGgGGGGG----GGGGGG-GGc -5'
29154 5' -75.3 NC_006146.1 + 149316 0.66 0.203916
Target:  5'- uUGCCCCCUugaUCCCCCCCUUaggCUCCaCGa -3'
miRNA:   3'- cACGGGGGG---GGGGGGGGGGg--GGGG-GC- -5'
29154 5' -75.3 NC_006146.1 + 148989 0.7 0.106407
Target:  5'- cUGCCagCUUCCCCgCCCCUCCUCCUCGg -3'
miRNA:   3'- cACGGg-GGGGGGG-GGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 146929 0.72 0.073355
Target:  5'- -cGCCCCCUCUCCggCUCCCCCaCCCGa -3'
miRNA:   3'- caCGGGGGGGGGGggGGGGGGG-GGGC- -5'
29154 5' -75.3 NC_006146.1 + 144717 0.67 0.163675
Target:  5'- -gGCCgCCCCCUCCgaccuaauCCCCUCCaggccgcuuaagCCCCCGu -3'
miRNA:   3'- caCGG-GGGGGGGG--------GGGGGGG------------GGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 138753 0.67 0.167354
Target:  5'- uUGCCUgagCCCaUCCCCCaCCCCagcaCCCCGg -3'
miRNA:   3'- cACGGG---GGGgGGGGGG-GGGGg---GGGGC- -5'
29154 5' -75.3 NC_006146.1 + 138715 0.79 0.020232
Target:  5'- aGUGUaaUCCUCCCCCCCCUaCCCCCCCCu -3'
miRNA:   3'- -CACG--GGGGGGGGGGGGG-GGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 138546 0.66 0.208381
Target:  5'- gGUGCCCCCCUauccuaCCUcgaggugcgccaCCCUUCCUCCCu -3'
miRNA:   3'- -CACGGGGGGGg-----GGG------------GGGGGGGGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.