miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29154 5' -75.3 NC_006146.1 + 167119 1.06 0.000156
Target:  5'- cGUGCCCCCCCCCCCCCCCCCCCCCCGc -3'
miRNA:   3'- -CACGGGGGGGGGGGGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 170892 0.8 0.016679
Target:  5'- -gGCCCCUCaaCCCCCCCUCCCCCCUGu -3'
miRNA:   3'- caCGGGGGGg-GGGGGGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 484 0.8 0.018371
Target:  5'- -gGCCCCgcgggaCCCCCCCCUCCgCCCCCGa -3'
miRNA:   3'- caCGGGGg-----GGGGGGGGGGGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 3279 0.8 0.018371
Target:  5'- -gGCCCCgcgggaCCCCCCCCUCCgCCCCCGa -3'
miRNA:   3'- caCGGGGg-----GGGGGGGGGGGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 1415 0.8 0.018371
Target:  5'- -gGCCCCgcgggaCCCCCCCCUCCgCCCCCGa -3'
miRNA:   3'- caCGGGGg-----GGGGGGGGGGGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 2347 0.8 0.018371
Target:  5'- -gGCCCCgcgggaCCCCCCCCUCCgCCCCCGa -3'
miRNA:   3'- caCGGGGg-----GGGGGGGGGGGgGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 93065 0.8 0.019279
Target:  5'- -aGUCCCaCCCCCCCgCCgCCCCCCUCCGc -3'
miRNA:   3'- caCGGGG-GGGGGGG-GG-GGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 34885 0.79 0.020232
Target:  5'- aGUGUaaUCCCUCCCCCCCCUaCCCCCCCu -3'
miRNA:   3'- -CACG--GGGGGGGGGGGGGG-GGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 138715 0.79 0.020232
Target:  5'- aGUGUaaUCCUCCCCCCCCUaCCCCCCCCu -3'
miRNA:   3'- -CACG--GGGGGGGGGGGGG-GGGGGGGGc -5'
29154 5' -75.3 NC_006146.1 + 25990 0.79 0.02338
Target:  5'- --cCCCCUCCaCCCCaguCCCCCCCCCCCGc -3'
miRNA:   3'- cacGGGGGGG-GGGG---GGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 29068 0.79 0.02338
Target:  5'- --cCCCCUCCaCCCCaguCCCCCCCCCCCGc -3'
miRNA:   3'- cacGGGGGGG-GGGG---GGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 13679 0.79 0.02338
Target:  5'- --cCCCCUCCaCCCCaguCCCCCCCCCCCGc -3'
miRNA:   3'- cacGGGGGGG-GGGG---GGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 19835 0.79 0.02338
Target:  5'- --cCCCCUCCaCCCCaguCCCCCCCCCCCGc -3'
miRNA:   3'- cacGGGGGGG-GGGG---GGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 22913 0.79 0.02338
Target:  5'- --cCCCCUCCaCCCCaguCCCCCCCCCCCGc -3'
miRNA:   3'- cacGGGGGGG-GGGG---GGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 16757 0.79 0.02338
Target:  5'- --cCCCCUCCaCCCCaguCCCCCCCCCCCGc -3'
miRNA:   3'- cacGGGGGGG-GGGG---GGGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 4033 0.78 0.026368
Target:  5'- -cGCCCUCCgCUCCCCCCUCCCgCCGg -3'
miRNA:   3'- caCGGGGGGgGGGGGGGGGGGGgGGC- -5'
29154 5' -75.3 NC_006146.1 + 23158 0.78 0.02701
Target:  5'- -cGCCUCCCCCUCCUcuCUCCCUCCCCGa -3'
miRNA:   3'- caCGGGGGGGGGGGG--GGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 13925 0.78 0.02701
Target:  5'- -cGCCUCCCCCUCCUcuCUCCCUCCCCGa -3'
miRNA:   3'- caCGGGGGGGGGGGG--GGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 17002 0.78 0.02701
Target:  5'- -cGCCUCCCCCUCCUcuCUCCCUCCCCGa -3'
miRNA:   3'- caCGGGGGGGGGGGG--GGGGGGGGGGC- -5'
29154 5' -75.3 NC_006146.1 + 20080 0.78 0.02701
Target:  5'- -cGCCUCCCCCUCCUcuCUCCCUCCCCGa -3'
miRNA:   3'- caCGGGGGGGGGGGG--GGGGGGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.