miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29155 5' -55.6 NC_006146.1 + 168078 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 166493 0.71 0.722898
Target:  5'- gCUAGAAucgcagcguggugccAGUcGGGCgGCUGUGCCaAGcGGCa -3'
miRNA:   3'- -GGUCUU---------------UCA-CCCG-UGACACGG-UC-CCG- -5'
29155 5' -55.6 NC_006146.1 + 52326 0.7 0.738571
Target:  5'- cCCuGAc-GUGGGC-CgggGUGcCCGGGGCg -3'
miRNA:   3'- -GGuCUuuCACCCGuGa--CAC-GGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 49469 0.66 0.941374
Target:  5'- aCCGGGAuGGUgaGGGcCGCgGUGUCggccaGGGGCg -3'
miRNA:   3'- -GGUCUU-UCA--CCC-GUGaCACGG-----UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 95518 0.74 0.516582
Target:  5'- uCCGGGAgcugucgGGUGcGGCGcCUG-GCCAGGGUc -3'
miRNA:   3'- -GGUCUU-------UCAC-CCGU-GACaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 96950 0.74 0.527344
Target:  5'- uCCGcGAGucUGGGCGCcaggGUGUCGGGGCa -3'
miRNA:   3'- -GGU-CUUucACCCGUGa---CACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 79099 0.73 0.567122
Target:  5'- cCCAGAAAGcUGGGUuucguaaggcccGCggGUGCCAGcacGGCa -3'
miRNA:   3'- -GGUCUUUC-ACCCG------------UGa-CACGGUC---CCG- -5'
29155 5' -55.6 NC_006146.1 + 44307 0.73 0.577195
Target:  5'- aCCGGu-AGUGGGgGCUGggGCCGuGGCa -3'
miRNA:   3'- -GGUCuuUCACCCgUGACa-CGGUcCCG- -5'
29155 5' -55.6 NC_006146.1 + 131472 0.72 0.638207
Target:  5'- cCCAGugcacccAGGUGGGUcugggGUGCCAGGGa -3'
miRNA:   3'- -GGUCu------UUCACCCGuga--CACGGUCCCg -5'
29155 5' -55.6 NC_006146.1 + 155216 0.71 0.688979
Target:  5'- cCCGugauGAAGGUGuacaGGCugUGgGUCAGGGCg -3'
miRNA:   3'- -GGU----CUUUCAC----CCGugACaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 44476 0.71 0.687971
Target:  5'- gCAGGAAGcGuGGC-CUGUGCCGugcucgcgaccccGGGCg -3'
miRNA:   3'- gGUCUUUCaC-CCGuGACACGGU-------------CCCG- -5'
29155 5' -55.6 NC_006146.1 + 149828 0.72 0.638207
Target:  5'- uCCGGGugguGUGGGCg----GCCAGGGCc -3'
miRNA:   3'- -GGUCUuu--CACCCGugacaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 169010 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 41599 0.71 0.688979
Target:  5'- gCGGAGAGgcccgGGGgGCUGguccgcuggGCCcGGGCg -3'
miRNA:   3'- gGUCUUUCa----CCCgUGACa--------CGGuCCCG- -5'
29155 5' -55.6 NC_006146.1 + 169942 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 102037 0.73 0.617807
Target:  5'- aCUGGAAcuugcugucAGUGGGUugUuGUGUgGGGGCa -3'
miRNA:   3'- -GGUCUU---------UCACCCGugA-CACGgUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 60131 0.71 0.688979
Target:  5'- gCCGGGGgagggaccuGGUGGGgGgugUGUGCCAGGGg -3'
miRNA:   3'- -GGUCUU---------UCACCCgUg--ACACGGUCCCg -5'
29155 5' -55.6 NC_006146.1 + 147088 0.71 0.727819
Target:  5'- gCCAGGgagagagAAGUGGGCGa---GCUGGGGCu -3'
miRNA:   3'- -GGUCU-------UUCACCCGUgacaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 167147 1.06 0.005518
Target:  5'- gUAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- gGUCUUUCACCCGUGACACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 51165 0.74 0.557095
Target:  5'- gUCGGA--GUGGGCugUGgaGCCGGGGa -3'
miRNA:   3'- -GGUCUuuCACCCGugACa-CGGUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.