miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29155 5' -55.6 NC_006146.1 + 169942 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 168078 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 169010 1.13 0.001875
Target:  5'- aCCAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCACCCGUGACACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 167147 1.06 0.005518
Target:  5'- gUAGAAAGUGGGCACUGUGCCAGGGCc -3'
miRNA:   3'- gGUCUUUCACCCGUGACACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 15026 0.86 0.11324
Target:  5'- gCCAGGGAG-GGGCGcCUG-GCCAGGGCc -3'
miRNA:   3'- -GGUCUUUCaCCCGU-GACaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 95518 0.74 0.516582
Target:  5'- uCCGGGAgcugucgGGUGcGGCGcCUG-GCCAGGGUc -3'
miRNA:   3'- -GGUCUU-------UCAC-CCGU-GACaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 96950 0.74 0.527344
Target:  5'- uCCGcGAGucUGGGCGCcaggGUGUCGGGGCa -3'
miRNA:   3'- -GGU-CUUucACCCGUGa---CACGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 51165 0.74 0.557095
Target:  5'- gUCGGA--GUGGGCugUGgaGCCGGGGa -3'
miRNA:   3'- -GGUCUuuCACCCGugACa-CGGUCCCg -5'
29155 5' -55.6 NC_006146.1 + 79099 0.73 0.567122
Target:  5'- cCCAGAAAGcUGGGUuucguaaggcccGCggGUGCCAGcacGGCa -3'
miRNA:   3'- -GGUCUUUC-ACCCG------------UGa-CACGGUC---CCG- -5'
29155 5' -55.6 NC_006146.1 + 44307 0.73 0.577195
Target:  5'- aCCGGu-AGUGGGgGCUGggGCCGuGGCa -3'
miRNA:   3'- -GGUCuuUCACCCgUGACa-CGGUcCCG- -5'
29155 5' -55.6 NC_006146.1 + 150671 0.73 0.597451
Target:  5'- gCCGGGgagGGGUGGGgAgUG-GCCAGGGg -3'
miRNA:   3'- -GGUCU---UUCACCCgUgACaCGGUCCCg -5'
29155 5' -55.6 NC_006146.1 + 157673 0.73 0.597451
Target:  5'- aCAGAGAGaGGGCAgaGccaGCCAGcGGCu -3'
miRNA:   3'- gGUCUUUCaCCCGUgaCa--CGGUC-CCG- -5'
29155 5' -55.6 NC_006146.1 + 62414 0.73 0.60762
Target:  5'- uCCGGAAccccgGGUGGGCugGCUGaagcgGCCuccGGGCu -3'
miRNA:   3'- -GGUCUU-----UCACCCG--UGACa----CGGu--CCCG- -5'
29155 5' -55.6 NC_006146.1 + 102037 0.73 0.617807
Target:  5'- aCUGGAAcuugcugucAGUGGGUugUuGUGUgGGGGCa -3'
miRNA:   3'- -GGUCUU---------UCACCCGugA-CACGgUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 144515 0.73 0.617808
Target:  5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3'
miRNA:   3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5'
29155 5' -55.6 NC_006146.1 + 148439 0.73 0.617808
Target:  5'- aCAGAGAGagGGGCAgaGccaGCCAGcGGCu -3'
miRNA:   3'- gGUCUUUCa-CCCGUgaCa--CGGUC-CCG- -5'
29155 5' -55.6 NC_006146.1 + 141437 0.73 0.617808
Target:  5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3'
miRNA:   3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5'
29155 5' -55.6 NC_006146.1 + 153748 0.73 0.617808
Target:  5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3'
miRNA:   3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5'
29155 5' -55.6 NC_006146.1 + 145361 0.73 0.617808
Target:  5'- aCAGAGAGagGGGCAgaGccaGCCAGcGGCu -3'
miRNA:   3'- gGUCUUUCa-CCCGUgaCa--CGGUC-CCG- -5'
29155 5' -55.6 NC_006146.1 + 147593 0.73 0.617808
Target:  5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3'
miRNA:   3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.