Results 21 - 40 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29155 | 5' | -55.6 | NC_006146.1 | + | 148439 | 0.73 | 0.617808 |
Target: 5'- aCAGAGAGagGGGCAgaGccaGCCAGcGGCu -3' miRNA: 3'- gGUCUUUCa-CCCGUgaCa--CGGUC-CCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 151517 | 0.73 | 0.617808 |
Target: 5'- aCAGAGAGagGGGCAgaGccaGCCAGcGGCu -3' miRNA: 3'- gGUCUUUCa-CCCGUgaCa--CGGUC-CCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 156826 | 0.73 | 0.617808 |
Target: 5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3' miRNA: 3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 153748 | 0.73 | 0.617808 |
Target: 5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3' miRNA: 3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 131472 | 0.72 | 0.638207 |
Target: 5'- cCCAGugcacccAGGUGGGUcugggGUGCCAGGGa -3' miRNA: 3'- -GGUCu------UUCACCCGuga--CACGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 149828 | 0.72 | 0.638207 |
Target: 5'- uCCGGGugguGUGGGCg----GCCAGGGCc -3' miRNA: 3'- -GGUCUuu--CACCCGugacaCGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 122610 | 0.72 | 0.638208 |
Target: 5'- -uGGAGGGcgagGGGCGgaGgagGCCGGGGCc -3' miRNA: 3'- ggUCUUUCa---CCCGUgaCa--CGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 129120 | 0.72 | 0.658588 |
Target: 5'- gCCuGAGAGcGGGCGCccggGCgCAGGGCc -3' miRNA: 3'- -GGuCUUUCaCCCGUGaca-CG-GUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 18846 | 0.72 | 0.658588 |
Target: 5'- uCCAGAccccGGGCGC--UGCCGGGGUg -3' miRNA: 3'- -GGUCUuucaCCCGUGacACGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 62930 | 0.72 | 0.658588 |
Target: 5'- gCGGAGGGUGaGGC--UGUGCCuguggagguuaGGGGCa -3' miRNA: 3'- gGUCUUUCAC-CCGugACACGG-----------UCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 39855 | 0.71 | 0.678884 |
Target: 5'- gCCGGc-GG-GGGCugUGUGCCcGGGGg -3' miRNA: 3'- -GGUCuuUCaCCCGugACACGG-UCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 44476 | 0.71 | 0.687971 |
Target: 5'- gCAGGAAGcGuGGC-CUGUGCCGugcucgcgaccccGGGCg -3' miRNA: 3'- gGUCUUUCaC-CCGuGACACGGU-------------CCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 139720 | 0.71 | 0.688979 |
Target: 5'- --cGAGGGUGGGCugUGUGguuaCCAGGa- -3' miRNA: 3'- gguCUUUCACCCGugACAC----GGUCCcg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 41599 | 0.71 | 0.688979 |
Target: 5'- gCGGAGAGgcccgGGGgGCUGguccgcuggGCCcGGGCg -3' miRNA: 3'- gGUCUUUCa----CCCgUGACa--------CGGuCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 60131 | 0.71 | 0.688979 |
Target: 5'- gCCGGGGgagggaccuGGUGGGgGgugUGUGCCAGGGg -3' miRNA: 3'- -GGUCUU---------UCACCCgUg--ACACGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 155216 | 0.71 | 0.688979 |
Target: 5'- cCCGugauGAAGGUGuacaGGCugUGgGUCAGGGCg -3' miRNA: 3'- -GGU----CUUUCAC----CCGugACaCGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 162402 | 0.71 | 0.709019 |
Target: 5'- cCUGGGAguaacaaguGGUGGGCACgg-GCUAGGGg -3' miRNA: 3'- -GGUCUU---------UCACCCGUGacaCGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 77544 | 0.71 | 0.709019 |
Target: 5'- aCCGGGccacGUGuacguGGCGCUGU-CCAGGGCc -3' miRNA: 3'- -GGUCUuu--CAC-----CCGUGACAcGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 44767 | 0.71 | 0.718947 |
Target: 5'- uCgGGGGAGaGGGUGCcGUGCC-GGGCu -3' miRNA: 3'- -GgUCUUUCaCCCGUGaCACGGuCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 166493 | 0.71 | 0.722898 |
Target: 5'- gCUAGAAucgcagcguggugccAGUcGGGCgGCUGUGCCaAGcGGCa -3' miRNA: 3'- -GGUCUU---------------UCA-CCCG-UGACACGG-UC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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