Results 21 - 40 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29155 | 5' | -55.6 | NC_006146.1 | + | 41711 | 0.7 | 0.74825 |
Target: 5'- gCGGggGGUGcGGCGCUGUgGCCuuuuGCa -3' miRNA: 3'- gGUCuuUCAC-CCGUGACA-CGGucc-CG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 41744 | 0.67 | 0.910046 |
Target: 5'- aCCGGGcccugagacGGGUGGGCuucccgccggaggccCUGcGCCcGGGCg -3' miRNA: 3'- -GGUCU---------UUCACCCGu--------------GACaCGGuCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 42377 | 0.69 | 0.829725 |
Target: 5'- gCCAG--GGUGGGCGaggGgcgccCCAGGGCc -3' miRNA: 3'- -GGUCuuUCACCCGUga-Cac---GGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 44182 | 0.66 | 0.931679 |
Target: 5'- aCAGGGAGaGGcacgcgcggcuGCACUGcaGCCGGGGg -3' miRNA: 3'- gGUCUUUCaCC-----------CGUGACa-CGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 44307 | 0.73 | 0.577195 |
Target: 5'- aCCGGu-AGUGGGgGCUGggGCCGuGGCa -3' miRNA: 3'- -GGUCuuUCACCCgUGACa-CGGUcCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 44476 | 0.71 | 0.687971 |
Target: 5'- gCAGGAAGcGuGGC-CUGUGCCGugcucgcgaccccGGGCg -3' miRNA: 3'- gGUCUUUCaC-CCGuGACACGGU-------------CCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 44767 | 0.71 | 0.718947 |
Target: 5'- uCgGGGGAGaGGGUGCcGUGCC-GGGCu -3' miRNA: 3'- -GgUCUUUCaCCCGUGaCACGGuCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 45026 | 0.67 | 0.883471 |
Target: 5'- cCCucGAGAGUGaGGgAgaGagGCCGGGGCc -3' miRNA: 3'- -GGu-CUUUCAC-CCgUgaCa-CGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 47980 | 0.66 | 0.926476 |
Target: 5'- gCCAGAgcGUGGGguCagagGUgGCUGGuGGCg -3' miRNA: 3'- -GGUCUuuCACCCguGa---CA-CGGUC-CCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 48026 | 0.67 | 0.903296 |
Target: 5'- aCCGGGAGGUGcgaggcucGGCACUGUacgaaGCCAGc-- -3' miRNA: 3'- -GGUCUUUCAC--------CCGUGACA-----CGGUCccg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 49469 | 0.66 | 0.941374 |
Target: 5'- aCCGGGAuGGUgaGGGcCGCgGUGUCggccaGGGGCg -3' miRNA: 3'- -GGUCUU-UCA--CCC-GUGaCACGG-----UCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 51165 | 0.74 | 0.557095 |
Target: 5'- gUCGGA--GUGGGCugUGgaGCCGGGGa -3' miRNA: 3'- -GGUCUuuCACCCGugACa-CGGUCCCg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 51270 | 0.7 | 0.767295 |
Target: 5'- cCCGGAGGGUGGcGUugUuggGCCAGGa- -3' miRNA: 3'- -GGUCUUUCACC-CGugAca-CGGUCCcg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 51505 | 0.66 | 0.926476 |
Target: 5'- -gGGAAGuuGUGGGguCUG-GCgGGGGUu -3' miRNA: 3'- ggUCUUU--CACCCguGACaCGgUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 51655 | 0.71 | 0.728801 |
Target: 5'- cCCAGggGGccaGGGC-CgGUGCCGGGa- -3' miRNA: 3'- -GGUCuuUCa--CCCGuGaCACGGUCCcg -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 52080 | 0.68 | 0.846077 |
Target: 5'- gCCAGGGAGgcGGGCAUcaaguucgaggUGcUGCuCGGGGUc -3' miRNA: 3'- -GGUCUUUCa-CCCGUG-----------AC-ACG-GUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 52326 | 0.7 | 0.738571 |
Target: 5'- cCCuGAc-GUGGGC-CgggGUGcCCGGGGCg -3' miRNA: 3'- -GGuCUuuCACCCGuGa--CAC-GGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 53464 | 0.68 | 0.861657 |
Target: 5'- cCCGGGAGGcgcGGGUGCcucgucgGUCAGGGCc -3' miRNA: 3'- -GGUCUUUCa--CCCGUGaca----CGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 55033 | 0.66 | 0.926476 |
Target: 5'- gCGGGAug-GGGguCgggGCCGGGGCc -3' miRNA: 3'- gGUCUUucaCCCguGacaCGGUCCCG- -5' |
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29155 | 5' | -55.6 | NC_006146.1 | + | 57913 | 0.7 | 0.74825 |
Target: 5'- uCCAGGAcaugcAGaGGGCGCUG-GCCGGcGCc -3' miRNA: 3'- -GGUCUU-----UCaCCCGUGACaCGGUCcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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