miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29155 5' -55.6 NC_006146.1 + 148717 0.66 0.93168
Target:  5'- cCCAGAgcuaccccAAGgccaccGGGCGg-G-GCCAGGGCc -3'
miRNA:   3'- -GGUCU--------UUCa-----CCCGUgaCaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 127843 0.66 0.93168
Target:  5'- cCUGGAGGGUGGGC-UUGggcaGCCGGcGuGCc -3'
miRNA:   3'- -GGUCUUUCACCCGuGACa---CGGUC-C-CG- -5'
29155 5' -55.6 NC_006146.1 + 94096 0.66 0.93168
Target:  5'- aCCAGAGAGcagcGGCcuccugauaGCcGUGUgGGGGCg -3'
miRNA:   3'- -GGUCUUUCac--CCG---------UGaCACGgUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 108355 0.66 0.93168
Target:  5'- aCCAGAcgAAG-GGaGUGCUG-GCCAGGa- -3'
miRNA:   3'- -GGUCU--UUCaCC-CGUGACaCGGUCCcg -5'
29155 5' -55.6 NC_006146.1 + 142562 0.66 0.93168
Target:  5'- cCCAGAgcuaccccAAGgccaccGGGCGg-G-GCCAGGGCc -3'
miRNA:   3'- -GGUCU--------UUCa-----CCCGUgaCaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 44182 0.66 0.931679
Target:  5'- aCAGGGAGaGGcacgcgcggcuGCACUGcaGCCGGGGg -3'
miRNA:   3'- gGUCUUUCaCC-----------CGUGACa-CGGUCCCg -5'
29155 5' -55.6 NC_006146.1 + 168308 0.66 0.931679
Target:  5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3'
miRNA:   3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 167376 0.66 0.931679
Target:  5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3'
miRNA:   3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 126015 0.66 0.931679
Target:  5'- -gGGgcGGUGGGCuuCUGcUGCU-GGGCc -3'
miRNA:   3'- ggUCuuUCACCCGu-GAC-ACGGuCCCG- -5'
29155 5' -55.6 NC_006146.1 + 170171 0.66 0.931679
Target:  5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3'
miRNA:   3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 169240 0.66 0.931679
Target:  5'- gCCGGGggcuGAGgGGGCucccgaggGCgggGCCGGGGCc -3'
miRNA:   3'- -GGUCU----UUCaCCCG--------UGacaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 136733 0.66 0.927008
Target:  5'- uCCGGcuGG-GGGCGCaccccccacccucGCCGGGGCu -3'
miRNA:   3'- -GGUCuuUCaCCCGUGaca----------CGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 30143 0.66 0.926477
Target:  5'- -aGGggGGUGGGCAUg--GCCacgcauccgagAGcGGCa -3'
miRNA:   3'- ggUCuuUCACCCGUGacaCGG-----------UC-CCG- -5'
29155 5' -55.6 NC_006146.1 + 137723 0.66 0.926477
Target:  5'- gCCAGGaccGAGcgGcGGCGCggcgGUGCCcagccGGGCc -3'
miRNA:   3'- -GGUCU---UUCa-C-CCGUGa---CACGGu----CCCG- -5'
29155 5' -55.6 NC_006146.1 + 98285 0.66 0.926476
Target:  5'- uCCcGAAAGUaGGCGgUGggGCUgAGGGCg -3'
miRNA:   3'- -GGuCUUUCAcCCGUgACa-CGG-UCCCG- -5'
29155 5' -55.6 NC_006146.1 + 66746 0.66 0.926476
Target:  5'- gUCAGggGGUGGGCAUgccgauuUGaaaaaauagaCGGGGUg -3'
miRNA:   3'- -GGUCuuUCACCCGUGac-----ACg---------GUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 51505 0.66 0.926476
Target:  5'- -gGGAAGuuGUGGGguCUG-GCgGGGGUu -3'
miRNA:   3'- ggUCUUU--CACCCguGACaCGgUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 55033 0.66 0.926476
Target:  5'- gCGGGAug-GGGguCgggGCCGGGGCc -3'
miRNA:   3'- gGUCUUucaCCCguGacaCGGUCCCG- -5'
29155 5' -55.6 NC_006146.1 + 47980 0.66 0.926476
Target:  5'- gCCAGAgcGUGGGguCagagGUgGCUGGuGGCg -3'
miRNA:   3'- -GGUCUuuCACCCguGa---CA-CGGUC-CCG- -5'
29155 5' -55.6 NC_006146.1 + 107546 0.66 0.926476
Target:  5'- cCCAGGA---GGGCcCUGUGcCCAGuuaccGGCa -3'
miRNA:   3'- -GGUCUUucaCCCGuGACAC-GGUC-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.