Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29156 | 3' | -56.6 | NC_006146.1 | + | 773 | 0.68 | 0.822151 |
Target: 5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3' miRNA: 3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 1704 | 0.68 | 0.822151 |
Target: 5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3' miRNA: 3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 2636 | 0.68 | 0.822151 |
Target: 5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3' miRNA: 3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 3568 | 0.68 | 0.822151 |
Target: 5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3' miRNA: 3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 6442 | 0.67 | 0.856899 |
Target: 5'- -gACCCUagguUGCGcGGCGggGUUUCUCa -3' miRNA: 3'- agUGGGA----ACGCaCUGCuuCGGGGAGa -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 24037 | 0.69 | 0.762011 |
Target: 5'- gUCcCCCUggcgGgGUGACGcGGCCCCg-- -3' miRNA: 3'- -AGuGGGAa---CgCACUGCuUCGGGGaga -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 24451 | 0.69 | 0.742956 |
Target: 5'- gCGCCCgcGUGUGugGAccGCCCaCUCg -3' miRNA: 3'- aGUGGGaaCGCACugCUu-CGGG-GAGa -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 34948 | 0.66 | 0.892644 |
Target: 5'- gCACCCcgGgGUGACGuGGCaCCC-CUg -3' miRNA: 3'- aGUGGGaaCgCACUGCuUCG-GGGaGA- -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 41994 | 0.68 | 0.833014 |
Target: 5'- -gACCCgcacagcUGCGUGACGuugccGAGCuacuCCCUCUg -3' miRNA: 3'- agUGGGa------ACGCACUGC-----UUCG----GGGAGA- -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 52971 | 0.7 | 0.700792 |
Target: 5'- -gGCCCUccGCGgGGCGGggcgggcgucucgaGGCCCCUCUu -3' miRNA: 3'- agUGGGAa-CGCaCUGCU--------------UCGGGGAGA- -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 55251 | 0.69 | 0.771374 |
Target: 5'- gUCGCCCggGCGgcccgGGCGAAGCggCUCg -3' miRNA: 3'- -AGUGGGaaCGCa----CUGCUUCGggGAGa -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 63925 | 0.71 | 0.663643 |
Target: 5'- gCACCCUUGUGccuacugggguUGAauucuAGCCCCUCUc -3' miRNA: 3'- aGUGGGAACGC-----------ACUgcu--UCGGGGAGA- -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 97684 | 0.66 | 0.905403 |
Target: 5'- gCGCCCUgcucuCGaUGAUcgagaacgccaGGAGCCCCUCg -3' miRNA: 3'- aGUGGGAac---GC-ACUG-----------CUUCGGGGAGa -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 111847 | 0.7 | 0.69381 |
Target: 5'- gUCGCCC-UGCGUGuCGGcccgcuGCgCCCUCa -3' miRNA: 3'- -AGUGGGaACGCACuGCUu-----CG-GGGAGa -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 115291 | 0.66 | 0.899138 |
Target: 5'- gCAUCCggGCGggaGugGucauagauAAGCCCCUCg -3' miRNA: 3'- aGUGGGaaCGCa--CugC--------UUCGGGGAGa -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 118429 | 0.71 | 0.663643 |
Target: 5'- uUCACgCUcaggaccGUGuUGAUGAGGCCCCUCUc -3' miRNA: 3'- -AGUGgGAa------CGC-ACUGCUUCGGGGAGA- -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 120278 | 0.67 | 0.841164 |
Target: 5'- aCACCaagcugGUGUGcuCGGAGCCCCUg- -3' miRNA: 3'- aGUGGgaa---CGCACu-GCUUCGGGGAga -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 129693 | 0.66 | 0.892644 |
Target: 5'- gCGCCCagUGCccgcgGAUGggGCgCCUCa -3' miRNA: 3'- aGUGGGa-ACGca---CUGCuuCGgGGAGa -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 130008 | 0.68 | 0.833014 |
Target: 5'- cCGCCCggaucGCa-GACGAGGCCCCg-- -3' miRNA: 3'- aGUGGGaa---CGcaCUGCUUCGGGGaga -5' |
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29156 | 3' | -56.6 | NC_006146.1 | + | 131307 | 0.66 | 0.885927 |
Target: 5'- uUC-CCCaugGCGggggGGCuGGAGUCCCUCUu -3' miRNA: 3'- -AGuGGGaa-CGCa---CUG-CUUCGGGGAGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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