miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29156 3' -56.6 NC_006146.1 + 169843 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 170743 0.89 0.063336
Target:  5'- cCAgCCgaGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- aGUgGGaaCGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 118429 0.71 0.663643
Target:  5'- uUCACgCUcaggaccGUGuUGAUGAGGCCCCUCUc -3'
miRNA:   3'- -AGUGgGAa------CGC-ACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 97684 0.66 0.905403
Target:  5'- gCGCCCUgcucuCGaUGAUcgagaacgccaGGAGCCCCUCg -3'
miRNA:   3'- aGUGGGAac---GC-ACUG-----------CUUCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 167979 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 168011 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 168043 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 168911 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 168943 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 169812 0.89 0.063336
Target:  5'- cCAgCCgaGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- aGUgGGaaCGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 170902 0.96 0.020341
Target:  5'- aUCACCCUUGCGUGACGAAGCCCC--- -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGaga -5'
29156 3' -56.6 NC_006146.1 + 170870 0.97 0.018741
Target:  5'- aUCACCCUUGCGUaACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCAcUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 169875 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 167948 0.89 0.063336
Target:  5'- cCAgCCgaGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- aGUgGGaaCGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 169907 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 170806 1.06 0.004754
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 168880 0.89 0.063336
Target:  5'- cCAgCCgaGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- aGUgGGaaCGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 161309 0.71 0.623108
Target:  5'- gCugCUUaGCGUGGUGAAGCCCCUg- -3'
miRNA:   3'- aGugGGAaCGCACUGCUUCGGGGAga -5'
29156 3' -56.6 NC_006146.1 + 170774 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 170838 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.