miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29156 3' -56.6 NC_006146.1 + 129693 0.66 0.892644
Target:  5'- gCGCCCagUGCccgcgGAUGggGCgCCUCa -3'
miRNA:   3'- aGUGGGa-ACGca---CUGCuuCGgGGAGa -5'
29156 3' -56.6 NC_006146.1 + 111847 0.7 0.69381
Target:  5'- gUCGCCC-UGCGUGuCGGcccgcuGCgCCCUCa -3'
miRNA:   3'- -AGUGGGaACGCACuGCUu-----CG-GGGAGa -5'
29156 3' -56.6 NC_006146.1 + 142063 0.69 0.733281
Target:  5'- cCACCCggGC-UGcCGggGUCCCUCc -3'
miRNA:   3'- aGUGGGaaCGcACuGCuuCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 145141 0.69 0.733281
Target:  5'- cCACCCggGC-UGcCGggGUCCCUCc -3'
miRNA:   3'- aGUGGGaaCGcACuGCuuCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 148219 0.69 0.733281
Target:  5'- cCACCCggGC-UGcCGggGUCCCUCc -3'
miRNA:   3'- aGUGGGaaCGcACuGCuuCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 151297 0.69 0.733281
Target:  5'- cCACCCggGC-UGcCGggGUCCCUCc -3'
miRNA:   3'- aGUGGGaaCGcACuGCuuCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 154375 0.69 0.733281
Target:  5'- cCACCCggGC-UGcCGggGUCCCUCc -3'
miRNA:   3'- aGUGGGaaCGcACuGCuuCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 157453 0.69 0.733281
Target:  5'- cCACCCggGC-UGcCGggGUCCCUCc -3'
miRNA:   3'- aGUGGGaaCGcACuGCuuCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 24451 0.69 0.742956
Target:  5'- gCGCCCgcGUGUGugGAccGCCCaCUCg -3'
miRNA:   3'- aGUGGGaaCGCACugCUu-CGGG-GAGa -5'
29156 3' -56.6 NC_006146.1 + 131307 0.66 0.885927
Target:  5'- uUC-CCCaugGCGggggGGCuGGAGUCCCUCUu -3'
miRNA:   3'- -AGuGGGaa-CGCa---CUG-CUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 3568 0.68 0.822151
Target:  5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3'
miRNA:   3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5'
29156 3' -56.6 NC_006146.1 + 2636 0.68 0.822151
Target:  5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3'
miRNA:   3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5'
29156 3' -56.6 NC_006146.1 + 1704 0.68 0.822151
Target:  5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3'
miRNA:   3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5'
29156 3' -56.6 NC_006146.1 + 773 0.68 0.822151
Target:  5'- gCAgCCgaGCGUGACGAcgggacgccccgccGGCCCCccCUg -3'
miRNA:   3'- aGUgGGaaCGCACUGCU--------------UCGGGGa-GA- -5'
29156 3' -56.6 NC_006146.1 + 24037 0.69 0.762011
Target:  5'- gUCcCCCUggcgGgGUGACGcGGCCCCg-- -3'
miRNA:   3'- -AGuGGGAa---CgCACUGCuUCGGGGaga -5'
29156 3' -56.6 NC_006146.1 + 97684 0.66 0.905403
Target:  5'- gCGCCCUgcucuCGaUGAUcgagaacgccaGGAGCCCCUCg -3'
miRNA:   3'- aGUGGGAac---GC-ACUG-----------CUUCGGGGAGa -5'
29156 3' -56.6 NC_006146.1 + 168011 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 168043 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 168911 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5'
29156 3' -56.6 NC_006146.1 + 168943 1.08 0.003417
Target:  5'- aUCACCCUUGCGUGACGAAGCCCCUCUc -3'
miRNA:   3'- -AGUGGGAACGCACUGCUUCGGGGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.