miRNA display CGI


Results 61 - 80 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29157 5' -55.6 NC_006146.1 + 157747 0.67 0.909444
Target:  5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3'
miRNA:   3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 38166 0.67 0.903296
Target:  5'- cCCGGAGAaccgGGGCuACUGggGaCCAccGGGCa -3'
miRNA:   3'- -GGUCUUUca--CCCG-UGACa-C-GGU--CCCG- -5'
29157 5' -55.6 NC_006146.1 + 48026 0.67 0.903296
Target:  5'- aCCGGGAGGUGcgaggcucGGCACUGUacgaaGCCAGc-- -3'
miRNA:   3'- -GGUCUUUCAC--------CCGUGACA-----CGGUCccg -5'
29157 5' -55.6 NC_006146.1 + 14822 0.67 0.903296
Target:  5'- gCCGGAGGa-GGGCACgGUcucggGcCCGGGGCc -3'
miRNA:   3'- -GGUCUUUcaCCCGUGaCA-----C-GGUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 26255 0.67 0.896916
Target:  5'- gCCAGAGguGG-GGGCACggGUggcggaauuaGCCuGGGUg -3'
miRNA:   3'- -GGUCUU--UCaCCCGUGa-CA----------CGGuCCCG- -5'
29157 5' -55.6 NC_006146.1 + 129267 0.67 0.896916
Target:  5'- gUCAGGGAuGUgGGGCugguCUGcGCCcGGGCc -3'
miRNA:   3'- -GGUCUUU-CA-CCCGu---GACaCGGuCCCG- -5'
29157 5' -55.6 NC_006146.1 + 152279 0.67 0.896916
Target:  5'- uCCAGAGGGgcccgaGGGC-CUGaaagGCCccGGCg -3'
miRNA:   3'- -GGUCUUUCa-----CCCGuGACa---CGGucCCG- -5'
29157 5' -55.6 NC_006146.1 + 143045 0.67 0.896916
Target:  5'- uCCAGAGGGgcccgaGGGC-CUGaaagGCCccGGCg -3'
miRNA:   3'- -GGUCUUUCa-----CCCGuGACa---CGGucCCG- -5'
29157 5' -55.6 NC_006146.1 + 146123 0.67 0.896916
Target:  5'- uCCAGAGGGgcccgaGGGC-CUGaaagGCCccGGCg -3'
miRNA:   3'- -GGUCUUUCa-----CCCGuGACa---CGGucCCG- -5'
29157 5' -55.6 NC_006146.1 + 149201 0.67 0.896916
Target:  5'- uCCAGAGGGgcccgaGGGC-CUGaaagGCCccGGCg -3'
miRNA:   3'- -GGUCUUUCa-----CCCGuGACa---CGGucCCG- -5'
29157 5' -55.6 NC_006146.1 + 155357 0.67 0.896916
Target:  5'- uCCAGAGGGgcccgaGGGC-CUGaaagGCCccGGCg -3'
miRNA:   3'- -GGUCUUUCa-----CCCGuGACa---CGGucCCG- -5'
29157 5' -55.6 NC_006146.1 + 158436 0.67 0.896916
Target:  5'- uCCAGAGGGgcccgaGGGC-CUGaaagGCCccGGCg -3'
miRNA:   3'- -GGUCUUUCa-----CCCGuGACa---CGGucCCG- -5'
29157 5' -55.6 NC_006146.1 + 99782 0.67 0.896916
Target:  5'- gUAGAuGGcgGGGCGCagGUGUCucggaAGGGCa -3'
miRNA:   3'- gGUCUuUCa-CCCGUGa-CACGG-----UCCCG- -5'
29157 5' -55.6 NC_006146.1 + 89108 0.67 0.896265
Target:  5'- aCCGGAAaauggagcccGGUGGGauuggUAUUGUGCCucccggaagcccgGGGGUg -3'
miRNA:   3'- -GGUCUU----------UCACCC-----GUGACACGG-------------UCCCG- -5'
29157 5' -55.6 NC_006146.1 + 148756 0.67 0.890306
Target:  5'- gCCAGAGua-GGGa--UGaGCCGGGGCg -3'
miRNA:   3'- -GGUCUUucaCCCgugACaCGGUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 166019 0.67 0.890306
Target:  5'- gCGGuu-GUGGGCAUcggggGUGCCuGuGGCc -3'
miRNA:   3'- gGUCuuuCACCCGUGa----CACGGuC-CCG- -5'
29157 5' -55.6 NC_006146.1 + 117200 0.67 0.890306
Target:  5'- gCCAGAGAG-GuGGCagucucaaACUGcUGCCcccGGGCu -3'
miRNA:   3'- -GGUCUUUCaC-CCG--------UGAC-ACGGu--CCCG- -5'
29157 5' -55.6 NC_006146.1 + 168556 0.67 0.886232
Target:  5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3'
miRNA:   3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5'
29157 5' -55.6 NC_006146.1 + 169488 0.67 0.886232
Target:  5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3'
miRNA:   3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5'
29157 5' -55.6 NC_006146.1 + 170419 0.67 0.886232
Target:  5'- gCGGAGGGggGGGUcccgcggggcccggcGC-GUGCCGGGGg -3'
miRNA:   3'- gGUCUUUCa-CCCG---------------UGaCACGGUCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.