miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29157 5' -55.6 NC_006146.1 + 166019 0.67 0.890306
Target:  5'- gCGGuu-GUGGGCAUcggggGUGCCuGuGGCc -3'
miRNA:   3'- gGUCuuuCACCCGUGa----CACGGuC-CCG- -5'
29157 5' -55.6 NC_006146.1 + 162402 0.71 0.709019
Target:  5'- cCUGGGAguaacaaguGGUGGGCACgg-GCUAGGGg -3'
miRNA:   3'- -GGUCUU---------UCACCCGUGacaCGGUCCCg -5'
29157 5' -55.6 NC_006146.1 + 158809 0.66 0.936645
Target:  5'- -aAGAgcGUGuucaGGCACacgGCCGGGGCc -3'
miRNA:   3'- ggUCUuuCAC----CCGUGacaCGGUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 158436 0.67 0.896916
Target:  5'- uCCAGAGGGgcccgaGGGC-CUGaaagGCCccGGCg -3'
miRNA:   3'- -GGUCUUUCa-----CCCGuGACa---CGGucCCG- -5'
29157 5' -55.6 NC_006146.1 + 158235 0.66 0.941375
Target:  5'- aCCAGAGAGaaUGGcCACUGgGUCuuuaguuauGGGGCc -3'
miRNA:   3'- -GGUCUUUC--ACCcGUGACaCGG---------UCCCG- -5'
29157 5' -55.6 NC_006146.1 + 157951 0.66 0.93168
Target:  5'- cCCAGAgcuaccccAAGgccaccGGGCGg-G-GCCAGGGCc -3'
miRNA:   3'- -GGUCU--------UUCa-----CCCGUgaCaCGGUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 157747 0.67 0.909444
Target:  5'- gCCGGGucuUGGGC-CUGggagGuCCGGGGUg -3'
miRNA:   3'- -GGUCUuucACCCGuGACa---C-GGUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 157673 0.73 0.597451
Target:  5'- aCAGAGAGaGGGCAgaGccaGCCAGcGGCu -3'
miRNA:   3'- gGUCUUUCaCCCGUgaCa--CGGUC-CCG- -5'
29157 5' -55.6 NC_006146.1 + 156826 0.73 0.617808
Target:  5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3'
miRNA:   3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5'
29157 5' -55.6 NC_006146.1 + 156603 0.67 0.909444
Target:  5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3'
miRNA:   3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 155357 0.67 0.896916
Target:  5'- uCCAGAGGGgcccgaGGGC-CUGaaagGCCccGGCg -3'
miRNA:   3'- -GGUCUUUCa-----CCCGuGACa---CGGucCCG- -5'
29157 5' -55.6 NC_006146.1 + 155216 0.71 0.688979
Target:  5'- cCCGugauGAAGGUGuacaGGCugUGgGUCAGGGCg -3'
miRNA:   3'- -GGU----CUUUCAC----CCGugACaCGGUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 155156 0.66 0.941375
Target:  5'- aCCAGAGAGaaUGGcCACUGgGUCuuuaguuauGGGGCc -3'
miRNA:   3'- -GGUCUUUC--ACCcGUGACaCGG---------UCCCG- -5'
29157 5' -55.6 NC_006146.1 + 154873 0.66 0.93168
Target:  5'- cCCAGAgcuaccccAAGgccaccGGGCGg-G-GCCAGGGCc -3'
miRNA:   3'- -GGUCU--------UUCa-----CCCGUgaCaCGGUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 154595 0.73 0.617808
Target:  5'- aCAGAGAGagGGGCAgaGccaGCCAGcGGCu -3'
miRNA:   3'- gGUCUUUCa-CCCGUgaCa--CGGUC-CCG- -5'
29157 5' -55.6 NC_006146.1 + 153748 0.73 0.617808
Target:  5'- gCCGGGGaggGGUGGGgAgUG-GCCAGGGa -3'
miRNA:   3'- -GGUCUU---UCACCCgUgACaCGGUCCCg -5'
29157 5' -55.6 NC_006146.1 + 153525 0.67 0.909444
Target:  5'- cCUGGggGGaacUGGGCAgUGgacaCGGGGCu -3'
miRNA:   3'- -GGUCuuUC---ACCCGUgACacg-GUCCCG- -5'
29157 5' -55.6 NC_006146.1 + 152279 0.67 0.896916
Target:  5'- uCCAGAGGGgcccgaGGGC-CUGaaagGCCccGGCg -3'
miRNA:   3'- -GGUCUUUCa-----CCCGuGACa---CGGucCCG- -5'
29157 5' -55.6 NC_006146.1 + 152078 0.66 0.941375
Target:  5'- aCCAGAGAGaaUGGcCACUGgGUCuuuaguuauGGGGCc -3'
miRNA:   3'- -GGUCUUUC--ACCcGUGACaCGG---------UCCCG- -5'
29157 5' -55.6 NC_006146.1 + 151795 0.66 0.93168
Target:  5'- cCCAGAgcuaccccAAGgccaccGGGCGg-G-GCCAGGGCc -3'
miRNA:   3'- -GGUCU--------UUCa-----CCCGUgaCaCGGUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.