Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 183874 | 0.68 | 0.746936 |
Target: 5'- uGgGAGCGgugguugcAGCGGCGCaggcaaCGGGCUGCgGa -3' miRNA: 3'- gCgCUCGU--------UUGUCGCG------GUCCGACGgC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 74902 | 0.68 | 0.756218 |
Target: 5'- gCGCGAGCAcGgGGUGCCGauucaUGCCGa -3' miRNA: 3'- -GCGCUCGUuUgUCGCGGUccg--ACGGC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 120140 | 0.68 | 0.774469 |
Target: 5'- cCGCG-GCAAACAG-GCCAuGCUGUa- -3' miRNA: 3'- -GCGCuCGUUUGUCgCGGUcCGACGgc -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 4078 | 0.68 | 0.774469 |
Target: 5'- uCGcCGAGCA--UAGCGUCAGGCUcgaGCgGu -3' miRNA: 3'- -GC-GCUCGUuuGUCGCGGUCCGA---CGgC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 187372 | 0.68 | 0.778064 |
Target: 5'- gGCGAcaccagauaagaccaGCAAACAuaG-CAGGCUGCCa -3' miRNA: 3'- gCGCU---------------CGUUUGUcgCgGUCCGACGGc -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 2238 | 0.67 | 0.791369 |
Target: 5'- gCGCGGuucagcuGCAGGCgAGgGCCGuGGCcGCCGa -3' miRNA: 3'- -GCGCU-------CGUUUG-UCgCGGU-CCGaCGGC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 823 | 0.67 | 0.800937 |
Target: 5'- cCGCGAGCGcugAGUcaGCCGGGCgGCuCGg -3' miRNA: 3'- -GCGCUCGUuugUCG--CGGUCCGaCG-GC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 27158 | 0.67 | 0.809486 |
Target: 5'- gGCG-GCAGACGucuacgauGUuCCAGGCUGCuCGg -3' miRNA: 3'- gCGCuCGUUUGU--------CGcGGUCCGACG-GC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 202859 | 0.67 | 0.815382 |
Target: 5'- gCGgGAGCuGGCAGCGCgggcaccuggaacgCGGGC-GCCu -3' miRNA: 3'- -GCgCUCGuUUGUCGCG--------------GUCCGaCGGc -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 115708 | 0.67 | 0.817053 |
Target: 5'- gGCGAGCGAGCcgcgguuGGaCGCCcaaGGGUUGUgGg -3' miRNA: 3'- gCGCUCGUUUG-------UC-GCGG---UCCGACGgC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 106089 | 0.67 | 0.817886 |
Target: 5'- aCGCu-GCAGAUAGCGCCucGGGCgaUGCa- -3' miRNA: 3'- -GCGcuCGUUUGUCGCGG--UCCG--ACGgc -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 207893 | 0.67 | 0.826129 |
Target: 5'- -uUGGGCGuucuGCAGUacugGCCGGGCcGCCGc -3' miRNA: 3'- gcGCUCGUu---UGUCG----CGGUCCGaCGGC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 202399 | 0.66 | 0.834207 |
Target: 5'- uCGaucaGAGCuuaauauACaAGCGCCucaGGGCUGCCc -3' miRNA: 3'- -GCg---CUCGuu-----UG-UCGCGG---UCCGACGGc -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 70966 | 0.66 | 0.834207 |
Target: 5'- gGCGAGU--GCAGcCGCUugcGGCUGuuGc -3' miRNA: 3'- gCGCUCGuuUGUC-GCGGu--CCGACggC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 105814 | 0.66 | 0.834207 |
Target: 5'- gCGCGAGuCAcGCGGC-CC--GCUGCCGc -3' miRNA: 3'- -GCGCUC-GUuUGUCGcGGucCGACGGC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 117103 | 0.66 | 0.842115 |
Target: 5'- gGCGAGacucgauguuGGCGGUGUUgagcGGCUGCCGg -3' miRNA: 3'- gCGCUCgu--------UUGUCGCGGu---CCGACGGC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 130681 | 0.66 | 0.849845 |
Target: 5'- uGCGAcGUuuuggaacgucuGAGgGGCG-CAGGCUGCCa -3' miRNA: 3'- gCGCU-CG------------UUUgUCGCgGUCCGACGGc -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 219476 | 0.66 | 0.852885 |
Target: 5'- aGCaGGCGAACAGCuGCCugaucaggacuggcGGCUGCg- -3' miRNA: 3'- gCGcUCGUUUGUCG-CGGu-------------CCGACGgc -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 181155 | 0.66 | 0.855147 |
Target: 5'- gGCGAGCGGGCAGgGCgGGGagaggaaucaugauaGUCGg -3' miRNA: 3'- gCGCUCGUUUGUCgCGgUCCga-------------CGGC- -5' |
|||||||
29163 | 3' | -58.9 | NC_006150.1 | + | 94229 | 0.66 | 0.857391 |
Target: 5'- uGCGAGU--ACuGgGCgAGGgaGCCGg -3' miRNA: 3'- gCGCUCGuuUGuCgCGgUCCgaCGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home