miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29163 3' -58.9 NC_006150.1 + 764 1.09 0.002078
Target:  5'- gCGCGAGCAAACAGCGCCAGGCUGCCGg -3'
miRNA:   3'- -GCGCUCGUUUGUCGCGGUCCGACGGC- -5'
29163 3' -58.9 NC_006150.1 + 119270 0.72 0.523513
Target:  5'- gCGCGuGGCcAGCGGCGCCGGaaUGCCc -3'
miRNA:   3'- -GCGC-UCGuUUGUCGCGGUCcgACGGc -5'
29163 3' -58.9 NC_006150.1 + 213776 0.72 0.523513
Target:  5'- uGCuGGCAAACAGCGCgCAauaaaaaauGGCUGUCa -3'
miRNA:   3'- gCGcUCGUUUGUCGCG-GU---------CCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 32698 0.72 0.542594
Target:  5'- gCGUGGGCA-ACAGCGUCgcucgcacgAGGgaGCCGg -3'
miRNA:   3'- -GCGCUCGUuUGUCGCGG---------UCCgaCGGC- -5'
29163 3' -58.9 NC_006150.1 + 88406 0.72 0.542594
Target:  5'- uGCGGugcGCGGACGgccGCGCUGGGuCUGCCGc -3'
miRNA:   3'- gCGCU---CGUUUGU---CGCGGUCC-GACGGC- -5'
29163 3' -58.9 NC_006150.1 + 149657 0.71 0.581385
Target:  5'- aCGCGAuGgAAGCAGcCGCCAaaGCUGCCu -3'
miRNA:   3'- -GCGCU-CgUUUGUC-GCGGUc-CGACGGc -5'
29163 3' -58.9 NC_006150.1 + 170813 0.71 0.581385
Target:  5'- gGCGAGUAAuacugcACGGgGUCAGGCggGCCc -3'
miRNA:   3'- gCGCUCGUU------UGUCgCGGUCCGa-CGGc -5'
29163 3' -58.9 NC_006150.1 + 122609 0.69 0.6798
Target:  5'- cCGCGAGCgGGACGGCGUuuauuagauCAuugugugacucuGGCUGCCu -3'
miRNA:   3'- -GCGCUCG-UUUGUCGCG---------GU------------CCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 88366 0.69 0.6798
Target:  5'- uGCGAGCuguGCGGuCcCCGGGUUGgCCGg -3'
miRNA:   3'- gCGCUCGuu-UGUC-GcGGUCCGAC-GGC- -5'
29163 3' -58.9 NC_006150.1 + 218391 0.69 0.689564
Target:  5'- aGCGGGCGGAgGGCaugcuGCCuGGUUuGCCGc -3'
miRNA:   3'- gCGCUCGUUUgUCG-----CGGuCCGA-CGGC- -5'
29163 3' -58.9 NC_006150.1 + 113352 0.69 0.698315
Target:  5'- uCGUacGGCAGGCAGacgucgagaccucCGCCGGGCUGCUu -3'
miRNA:   3'- -GCGc-UCGUUUGUC-------------GCGGUCCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 22121 0.69 0.699285
Target:  5'- aCGUGAGCAGccACAGUGCUGGagacuaCUGCCu -3'
miRNA:   3'- -GCGCUCGUU--UGUCGCGGUCc-----GACGGc -5'
29163 3' -58.9 NC_006150.1 + 199959 0.69 0.699285
Target:  5'- aGCGA-CAAugAcCGCCAGGCcGCCa -3'
miRNA:   3'- gCGCUcGUUugUcGCGGUCCGaCGGc -5'
29163 3' -58.9 NC_006150.1 + 149964 0.69 0.708953
Target:  5'- aGCGAG--GGCGGCGCgaccugcccgggCAGGgUGCCGa -3'
miRNA:   3'- gCGCUCguUUGUCGCG------------GUCCgACGGC- -5'
29163 3' -58.9 NC_006150.1 + 888 0.69 0.722384
Target:  5'- aGCGAGCugaaggAAccgguuuuuauuucaGCGuGCGCCGGGC-GCCGg -3'
miRNA:   3'- gCGCUCG------UU---------------UGU-CGCGGUCCGaCGGC- -5'
29163 3' -58.9 NC_006150.1 + 38106 0.68 0.728098
Target:  5'- gCGCGAauGCGG--GGCGCU-GGCUGCCu -3'
miRNA:   3'- -GCGCU--CGUUugUCGCGGuCCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 210572 0.68 0.73756
Target:  5'- aCGCuuGAGUAGACuGCGCaCcuGCUGCCu -3'
miRNA:   3'- -GCG--CUCGUUUGuCGCG-GucCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 80502 0.68 0.73756
Target:  5'- uCGCGAGcCAGACAGUGUgAGcgUGCCa -3'
miRNA:   3'- -GCGCUC-GUUUGUCGCGgUCcgACGGc -5'
29163 3' -58.9 NC_006150.1 + 1051 0.68 0.73756
Target:  5'- uCGCGgauaguugauAGUAGGCGGCGCgCAGGCaGgCGa -3'
miRNA:   3'- -GCGC----------UCGUUUGUCGCG-GUCCGaCgGC- -5'
29163 3' -58.9 NC_006150.1 + 183874 0.68 0.746936
Target:  5'- uGgGAGCGgugguugcAGCGGCGCaggcaaCGGGCUGCgGa -3'
miRNA:   3'- gCgCUCGU--------UUGUCGCG------GUCCGACGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.