miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29163 3' -58.9 NC_006150.1 + 764 1.09 0.002078
Target:  5'- gCGCGAGCAAACAGCGCCAGGCUGCCGg -3'
miRNA:   3'- -GCGCUCGUUUGUCGCGGUCCGACGGC- -5'
29163 3' -58.9 NC_006150.1 + 823 0.67 0.800937
Target:  5'- cCGCGAGCGcugAGUcaGCCGGGCgGCuCGg -3'
miRNA:   3'- -GCGCUCGUuugUCG--CGGUCCGaCG-GC- -5'
29163 3' -58.9 NC_006150.1 + 888 0.69 0.722384
Target:  5'- aGCGAGCugaaggAAccgguuuuuauuucaGCGuGCGCCGGGC-GCCGg -3'
miRNA:   3'- gCGCUCG------UU---------------UGU-CGCGGUCCGaCGGC- -5'
29163 3' -58.9 NC_006150.1 + 1051 0.68 0.73756
Target:  5'- uCGCGgauaguugauAGUAGGCGGCGCgCAGGCaGgCGa -3'
miRNA:   3'- -GCGC----------UCGUUUGUCGCG-GUCCGaCgGC- -5'
29163 3' -58.9 NC_006150.1 + 2238 0.67 0.791369
Target:  5'- gCGCGGuucagcuGCAGGCgAGgGCCGuGGCcGCCGa -3'
miRNA:   3'- -GCGCU-------CGUUUG-UCgCGGU-CCGaCGGC- -5'
29163 3' -58.9 NC_006150.1 + 4078 0.68 0.774469
Target:  5'- uCGcCGAGCA--UAGCGUCAGGCUcgaGCgGu -3'
miRNA:   3'- -GC-GCUCGUuuGUCGCGGUCCGA---CGgC- -5'
29163 3' -58.9 NC_006150.1 + 4303 0.66 0.857391
Target:  5'- gGUGAGCGAugAuaaaccCGCCAcacuguGGCUGUCGa -3'
miRNA:   3'- gCGCUCGUUugUc-----GCGGU------CCGACGGC- -5'
29163 3' -58.9 NC_006150.1 + 22121 0.69 0.699285
Target:  5'- aCGUGAGCAGccACAGUGCUGGagacuaCUGCCu -3'
miRNA:   3'- -GCGCUCGUU--UGUCGCGGUCc-----GACGGc -5'
29163 3' -58.9 NC_006150.1 + 27158 0.67 0.809486
Target:  5'- gGCG-GCAGACGucuacgauGUuCCAGGCUGCuCGg -3'
miRNA:   3'- gCGCuCGUUUGU--------CGcGGUCCGACG-GC- -5'
29163 3' -58.9 NC_006150.1 + 32698 0.72 0.542594
Target:  5'- gCGUGGGCA-ACAGCGUCgcucgcacgAGGgaGCCGg -3'
miRNA:   3'- -GCGCUCGUuUGUCGCGG---------UCCgaCGGC- -5'
29163 3' -58.9 NC_006150.1 + 38106 0.68 0.728098
Target:  5'- gCGCGAauGCGG--GGCGCU-GGCUGCCu -3'
miRNA:   3'- -GCGCU--CGUUugUCGCGGuCCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 65169 0.66 0.87191
Target:  5'- uGCaaacGGCcccCAGCGCCAcGGCcGCCGa -3'
miRNA:   3'- gCGc---UCGuuuGUCGCGGU-CCGaCGGC- -5'
29163 3' -58.9 NC_006150.1 + 70966 0.66 0.834207
Target:  5'- gGCGAGU--GCAGcCGCUugcGGCUGuuGc -3'
miRNA:   3'- gCGCUCGuuUGUC-GCGGu--CCGACggC- -5'
29163 3' -58.9 NC_006150.1 + 74902 0.68 0.756218
Target:  5'- gCGCGAGCAcGgGGUGCCGauucaUGCCGa -3'
miRNA:   3'- -GCGCUCGUuUgUCGCGGUccg--ACGGC- -5'
29163 3' -58.9 NC_006150.1 + 80502 0.68 0.73756
Target:  5'- uCGCGAGcCAGACAGUGUgAGcgUGCCa -3'
miRNA:   3'- -GCGCUC-GUUUGUCGCGgUCcgACGGc -5'
29163 3' -58.9 NC_006150.1 + 88074 0.68 0.746936
Target:  5'- gGCGccGCGGACuGCGCCaccgagcuccGGGCagGCCGg -3'
miRNA:   3'- gCGCu-CGUUUGuCGCGG----------UCCGa-CGGC- -5'
29163 3' -58.9 NC_006150.1 + 88366 0.69 0.6798
Target:  5'- uGCGAGCuguGCGGuCcCCGGGUUGgCCGg -3'
miRNA:   3'- gCGCUCGuu-UGUC-GcGGUCCGAC-GGC- -5'
29163 3' -58.9 NC_006150.1 + 88406 0.72 0.542594
Target:  5'- uGCGGugcGCGGACGgccGCGCUGGGuCUGCCGc -3'
miRNA:   3'- gCGCU---CGUUUGU---CGCGGUCC-GACGGC- -5'
29163 3' -58.9 NC_006150.1 + 92447 0.66 0.864748
Target:  5'- gGCGAGgAGGCGGUGaCCGuGUcGCCGg -3'
miRNA:   3'- gCGCUCgUUUGUCGC-GGUcCGaCGGC- -5'
29163 3' -58.9 NC_006150.1 + 92742 0.66 0.864748
Target:  5'- aGCGGGC--ACGGCGCUu--CUGCCu -3'
miRNA:   3'- gCGCUCGuuUGUCGCGGuccGACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.