miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29163 3' -58.9 NC_006150.1 + 219476 0.66 0.852885
Target:  5'- aGCaGGCGAACAGCuGCCugaucaggacuggcGGCUGCg- -3'
miRNA:   3'- gCGcUCGUUUGUCG-CGGu-------------CCGACGgc -5'
29163 3' -58.9 NC_006150.1 + 218391 0.69 0.689564
Target:  5'- aGCGGGCGGAgGGCaugcuGCCuGGUUuGCCGc -3'
miRNA:   3'- gCGCUCGUUUgUCG-----CGGuCCGA-CGGC- -5'
29163 3' -58.9 NC_006150.1 + 213776 0.72 0.523513
Target:  5'- uGCuGGCAAACAGCGCgCAauaaaaaauGGCUGUCa -3'
miRNA:   3'- gCGcUCGUUUGUCGCG-GU---------CCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 210572 0.68 0.73756
Target:  5'- aCGCuuGAGUAGACuGCGCaCcuGCUGCCu -3'
miRNA:   3'- -GCG--CUCGUUUGuCGCG-GucCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 207893 0.67 0.826129
Target:  5'- -uUGGGCGuucuGCAGUacugGCCGGGCcGCCGc -3'
miRNA:   3'- gcGCUCGUu---UGUCG----CGGUCCGaCGGC- -5'
29163 3' -58.9 NC_006150.1 + 202859 0.67 0.815382
Target:  5'- gCGgGAGCuGGCAGCGCgggcaccuggaacgCGGGC-GCCu -3'
miRNA:   3'- -GCgCUCGuUUGUCGCG--------------GUCCGaCGGc -5'
29163 3' -58.9 NC_006150.1 + 202399 0.66 0.834207
Target:  5'- uCGaucaGAGCuuaauauACaAGCGCCucaGGGCUGCCc -3'
miRNA:   3'- -GCg---CUCGuu-----UG-UCGCGG---UCCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 199959 0.69 0.699285
Target:  5'- aGCGA-CAAugAcCGCCAGGCcGCCa -3'
miRNA:   3'- gCGCUcGUUugUcGCGGUCCGaCGGc -5'
29163 3' -58.9 NC_006150.1 + 197280 0.66 0.864748
Target:  5'- gCGCGAu--GAUAGCcguauacacaGCCAGGCUGCg- -3'
miRNA:   3'- -GCGCUcguUUGUCG----------CGGUCCGACGgc -5'
29163 3' -58.9 NC_006150.1 + 187372 0.68 0.778064
Target:  5'- gGCGAcaccagauaagaccaGCAAACAuaG-CAGGCUGCCa -3'
miRNA:   3'- gCGCU---------------CGUUUGUcgCgGUCCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 183874 0.68 0.746936
Target:  5'- uGgGAGCGgugguugcAGCGGCGCaggcaaCGGGCUGCgGa -3'
miRNA:   3'- gCgCUCGU--------UUGUCGCG------GUCCGACGgC- -5'
29163 3' -58.9 NC_006150.1 + 182610 0.66 0.864748
Target:  5'- aGCGAGCGcAGCGGgugguCGCaCAGGagggagGCCGg -3'
miRNA:   3'- gCGCUCGU-UUGUC-----GCG-GUCCga----CGGC- -5'
29163 3' -58.9 NC_006150.1 + 181155 0.66 0.855147
Target:  5'- gGCGAGCGGGCAGgGCgGGGagaggaaucaugauaGUCGg -3'
miRNA:   3'- gCGCUCGUUUGUCgCGgUCCga-------------CGGC- -5'
29163 3' -58.9 NC_006150.1 + 170813 0.71 0.581385
Target:  5'- gGCGAGUAAuacugcACGGgGUCAGGCggGCCc -3'
miRNA:   3'- gCGCUCGUU------UGUCgCGGUCCGa-CGGc -5'
29163 3' -58.9 NC_006150.1 + 161334 0.66 0.857391
Target:  5'- gGCG-GUAAAUGGC-CCGcaauGGCUGCCa -3'
miRNA:   3'- gCGCuCGUUUGUCGcGGU----CCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 149964 0.69 0.708953
Target:  5'- aGCGAG--GGCGGCGCgaccugcccgggCAGGgUGCCGa -3'
miRNA:   3'- gCGCUCguUUGUCGCG------------GUCCgACGGC- -5'
29163 3' -58.9 NC_006150.1 + 149657 0.71 0.581385
Target:  5'- aCGCGAuGgAAGCAGcCGCCAaaGCUGCCu -3'
miRNA:   3'- -GCGCU-CgUUUGUC-GCGGUc-CGACGGc -5'
29163 3' -58.9 NC_006150.1 + 147854 0.66 0.87191
Target:  5'- aCGCGcGUAGGCAGCuuGagAGaGCUGCCGc -3'
miRNA:   3'- -GCGCuCGUUUGUCG--CggUC-CGACGGC- -5'
29163 3' -58.9 NC_006150.1 + 130681 0.66 0.849845
Target:  5'- uGCGAcGUuuuggaacgucuGAGgGGCG-CAGGCUGCCa -3'
miRNA:   3'- gCGCU-CG------------UUUgUCGCgGUCCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 122609 0.69 0.6798
Target:  5'- cCGCGAGCgGGACGGCGUuuauuagauCAuugugugacucuGGCUGCCu -3'
miRNA:   3'- -GCGCUCG-UUUGUCGCG---------GU------------CCGACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.