miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29163 3' -58.9 NC_006150.1 + 94229 0.66 0.857391
Target:  5'- uGCGAGU--ACuGgGCgAGGgaGCCGg -3'
miRNA:   3'- gCGCUCGuuUGuCgCGgUCCgaCGGC- -5'
29163 3' -58.9 NC_006150.1 + 106089 0.67 0.817886
Target:  5'- aCGCu-GCAGAUAGCGCCucGGGCgaUGCa- -3'
miRNA:   3'- -GCGcuCGUUUGUCGCGG--UCCG--ACGgc -5'
29163 3' -58.9 NC_006150.1 + 202399 0.66 0.834207
Target:  5'- uCGaucaGAGCuuaauauACaAGCGCCucaGGGCUGCCc -3'
miRNA:   3'- -GCg---CUCGuu-----UG-UCGCGG---UCCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 70966 0.66 0.834207
Target:  5'- gGCGAGU--GCAGcCGCUugcGGCUGuuGc -3'
miRNA:   3'- gCGCUCGuuUGUC-GCGGu--CCGACggC- -5'
29163 3' -58.9 NC_006150.1 + 105814 0.66 0.834207
Target:  5'- gCGCGAGuCAcGCGGC-CC--GCUGCCGc -3'
miRNA:   3'- -GCGCUC-GUuUGUCGcGGucCGACGGC- -5'
29163 3' -58.9 NC_006150.1 + 117103 0.66 0.842115
Target:  5'- gGCGAGacucgauguuGGCGGUGUUgagcGGCUGCCGg -3'
miRNA:   3'- gCGCUCgu--------UUGUCGCGGu---CCGACGGC- -5'
29163 3' -58.9 NC_006150.1 + 219476 0.66 0.852885
Target:  5'- aGCaGGCGAACAGCuGCCugaucaggacuggcGGCUGCg- -3'
miRNA:   3'- gCGcUCGUUUGUCG-CGGu-------------CCGACGgc -5'
29163 3' -58.9 NC_006150.1 + 181155 0.66 0.855147
Target:  5'- gGCGAGCGGGCAGgGCgGGGagaggaaucaugauaGUCGg -3'
miRNA:   3'- gCGCUCGUUUGUCgCGgUCCga-------------CGGC- -5'
29163 3' -58.9 NC_006150.1 + 4303 0.66 0.857391
Target:  5'- gGUGAGCGAugAuaaaccCGCCAcacuguGGCUGUCGa -3'
miRNA:   3'- gCGCUCGUUugUc-----GCGGU------CCGACGGC- -5'
29163 3' -58.9 NC_006150.1 + 115708 0.67 0.817053
Target:  5'- gGCGAGCGAGCcgcgguuGGaCGCCcaaGGGUUGUgGg -3'
miRNA:   3'- gCGCUCGUUUG-------UC-GCGG---UCCGACGgC- -5'
29163 3' -58.9 NC_006150.1 + 202859 0.67 0.815382
Target:  5'- gCGgGAGCuGGCAGCGCgggcaccuggaacgCGGGC-GCCu -3'
miRNA:   3'- -GCgCUCGuUUGUCGCG--------------GUCCGaCGGc -5'
29163 3' -58.9 NC_006150.1 + 187372 0.68 0.778064
Target:  5'- gGCGAcaccagauaagaccaGCAAACAuaG-CAGGCUGCCa -3'
miRNA:   3'- gCGCU---------------CGUUUGUcgCgGUCCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 88406 0.72 0.542594
Target:  5'- uGCGGugcGCGGACGgccGCGCUGGGuCUGCCGc -3'
miRNA:   3'- gCGCU---CGUUUGU---CGCGGUCC-GACGGC- -5'
29163 3' -58.9 NC_006150.1 + 170813 0.71 0.581385
Target:  5'- gGCGAGUAAuacugcACGGgGUCAGGCggGCCc -3'
miRNA:   3'- gCGCUCGUU------UGUCgCGGUCCGa-CGGc -5'
29163 3' -58.9 NC_006150.1 + 88366 0.69 0.6798
Target:  5'- uGCGAGCuguGCGGuCcCCGGGUUGgCCGg -3'
miRNA:   3'- gCGCUCGuu-UGUC-GcGGUCCGAC-GGC- -5'
29163 3' -58.9 NC_006150.1 + 122609 0.69 0.6798
Target:  5'- cCGCGAGCgGGACGGCGUuuauuagauCAuugugugacucuGGCUGCCu -3'
miRNA:   3'- -GCGCUCG-UUUGUCGCG---------GU------------CCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 113352 0.69 0.698315
Target:  5'- uCGUacGGCAGGCAGacgucgagaccucCGCCGGGCUGCUu -3'
miRNA:   3'- -GCGc-UCGUUUGUC-------------GCGGUCCGACGGc -5'
29163 3' -58.9 NC_006150.1 + 199959 0.69 0.699285
Target:  5'- aGCGA-CAAugAcCGCCAGGCcGCCa -3'
miRNA:   3'- gCGCUcGUUugUcGCGGUCCGaCGGc -5'
29163 3' -58.9 NC_006150.1 + 22121 0.69 0.699285
Target:  5'- aCGUGAGCAGccACAGUGCUGGagacuaCUGCCu -3'
miRNA:   3'- -GCGCUCGUU--UGUCGCGGUCc-----GACGGc -5'
29163 3' -58.9 NC_006150.1 + 149964 0.69 0.708953
Target:  5'- aGCGAG--GGCGGCGCgaccugcccgggCAGGgUGCCGa -3'
miRNA:   3'- gCGCUCguUUGUCGCG------------GUCCgACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.