Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29164 | 5' | -51.1 | NC_006150.1 | + | 101574 | 0.66 | 0.997815 |
Target: 5'- aGCCGGuUAAACgCCACAAaggaCGgaaagGCCcgCa -3' miRNA: 3'- -CGGCU-AUUUG-GGUGUUg---GCa----CGGuaG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 101319 | 0.7 | 0.96319 |
Target: 5'- cGCCGA--GACCCGCGaugcGCCGagGCCuggCa -3' miRNA: 3'- -CGGCUauUUGGGUGU----UGGCa-CGGua-G- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 10492 | 0.66 | 0.996946 |
Target: 5'- cUCGGUGuGCCCgccauGCGAUCGuUGUCAUCg -3' miRNA: 3'- cGGCUAUuUGGG-----UGUUGGC-ACGGUAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 196723 | 0.69 | 0.979923 |
Target: 5'- aGCC----AGCaCCACAGCCGUaGCCGUa -3' miRNA: 3'- -CGGcuauUUG-GGUGUUGGCA-CGGUAg -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 88504 | 0.69 | 0.975144 |
Target: 5'- cCCGAcGAGCCCugGACgcaGUGCUggAUCg -3' miRNA: 3'- cGGCUaUUUGGGugUUGg--CACGG--UAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 4311 | 0.69 | 0.975144 |
Target: 5'- -aUGAUAAACCCGCcacACUGUGgCUGUCg -3' miRNA: 3'- cgGCUAUUUGGGUGu--UGGCAC-GGUAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 103270 | 0.7 | 0.96319 |
Target: 5'- gGCCGGUGAcgGCagCGgGACCGUGCUAa- -3' miRNA: 3'- -CGGCUAUU--UGg-GUgUUGGCACGGUag -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 165801 | 0.71 | 0.955912 |
Target: 5'- -aCGAUGAACUCGCuGCCGaaGCCAUg -3' miRNA: 3'- cgGCUAUUUGGGUGuUGGCa-CGGUAg -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 47499 | 0.71 | 0.947714 |
Target: 5'- uGCCGAUGuggacauucGACCCGCAcaACCGU-CC-UCa -3' miRNA: 3'- -CGGCUAU---------UUGGGUGU--UGGCAcGGuAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 127979 | 0.75 | 0.822803 |
Target: 5'- -aUGAUGAACCaggucuuGCCGUGCCGUCg -3' miRNA: 3'- cgGCUAUUUGGgugu---UGGCACGGUAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 3795 | 0.69 | 0.979923 |
Target: 5'- aCCGA--GACCCGCAACaacauGUGCCu-- -3' miRNA: 3'- cGGCUauUUGGGUGUUGg----CACGGuag -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 149905 | 0.68 | 0.991413 |
Target: 5'- cGCCGAUGGGuCUCugGaaGCCG-GCCAc- -3' miRNA: 3'- -CGGCUAUUU-GGGugU--UGGCaCGGUag -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 169734 | 0.66 | 0.997815 |
Target: 5'- aGgCGGUAAGucaaaucaucgUCCACGACCGUcCCGUUa -3' miRNA: 3'- -CgGCUAUUU-----------GGGUGUUGGCAcGGUAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 152906 | 0.66 | 0.997411 |
Target: 5'- uGCCGG---ACCCGCugGACgCGUGaCUAUCc -3' miRNA: 3'- -CGGCUauuUGGGUG--UUG-GCAC-GGUAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 140321 | 0.66 | 0.996896 |
Target: 5'- cCUGGUGAAUgcucuugCCGCGGCaCGUGCCGa- -3' miRNA: 3'- cGGCUAUUUG-------GGUGUUG-GCACGGUag -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 131921 | 0.66 | 0.996946 |
Target: 5'- cGCCGGccuguUGGGCgaCgACGGCCuUGCCGUCg -3' miRNA: 3'- -CGGCU-----AUUUG--GgUGUUGGcACGGUAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 115257 | 0.67 | 0.995809 |
Target: 5'- cGCCGGUGguucguccGGCCC-CGACuagCGUGCUcuGUCa -3' miRNA: 3'- -CGGCUAU--------UUGGGuGUUG---GCACGG--UAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 129755 | 0.67 | 0.995123 |
Target: 5'- cCCGAUcgugauccaaGAcuguCCCGCGGCCGUGaccgaCGUCa -3' miRNA: 3'- cGGCUA----------UUu---GGGUGUUGGCACg----GUAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 216740 | 0.67 | 0.995123 |
Target: 5'- uGCuCGcgAAACCCACGACaaGUGgUGUCg -3' miRNA: 3'- -CG-GCuaUUUGGGUGUUGg-CACgGUAG- -5' |
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29164 | 5' | -51.1 | NC_006150.1 | + | 35251 | 0.67 | 0.9949 |
Target: 5'- aGCCGGUGAAgcuucucaauguguCCCugAuaccgcACCGUGaCCGUg -3' miRNA: 3'- -CGGCUAUUU--------------GGGugU------UGGCAC-GGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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