miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29164 5' -51.1 NC_006150.1 + 127979 0.75 0.822803
Target:  5'- -aUGAUGAACCaggucuuGCCGUGCCGUCg -3'
miRNA:   3'- cgGCUAUUUGGgugu---UGGCACGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 129755 0.67 0.995123
Target:  5'- cCCGAUcgugauccaaGAcuguCCCGCGGCCGUGaccgaCGUCa -3'
miRNA:   3'- cGGCUA----------UUu---GGGUGUUGGCACg----GUAG- -5'
29164 5' -51.1 NC_006150.1 + 130613 0.7 0.969584
Target:  5'- gGCCGGgauuuGGCCUugGACCGUGUagaCAUg -3'
miRNA:   3'- -CGGCUau---UUGGGugUUGGCACG---GUAg -5'
29164 5' -51.1 NC_006150.1 + 131587 0.66 0.997815
Target:  5'- cGCCGAU-AGCUCGgAACCGagGUCAg- -3'
miRNA:   3'- -CGGCUAuUUGGGUgUUGGCa-CGGUag -5'
29164 5' -51.1 NC_006150.1 + 131921 0.66 0.996946
Target:  5'- cGCCGGccuguUGGGCgaCgACGGCCuUGCCGUCg -3'
miRNA:   3'- -CGGCU-----AUUUG--GgUGUUGGcACGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 132189 0.68 0.991413
Target:  5'- aCCGucuGGCUCACGACgGcaagGCCGUCg -3'
miRNA:   3'- cGGCuauUUGGGUGUUGgCa---CGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 140321 0.66 0.996896
Target:  5'- cCUGGUGAAUgcucuugCCGCGGCaCGUGCCGa- -3'
miRNA:   3'- cGGCUAUUUG-------GGUGUUG-GCACGGUag -5'
29164 5' -51.1 NC_006150.1 + 148614 0.69 0.975144
Target:  5'- cGCgGAacGGCCCGCuuACCGU-CCGUCu -3'
miRNA:   3'- -CGgCUauUUGGGUGu-UGGCAcGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 149905 0.68 0.991413
Target:  5'- cGCCGAUGGGuCUCugGaaGCCG-GCCAc- -3'
miRNA:   3'- -CGGCUAUUU-GGGugU--UGGCaCGGUag -5'
29164 5' -51.1 NC_006150.1 + 152571 0.73 0.871032
Target:  5'- aUCGGUAAucCCCAgAGCCGUGUCGUa -3'
miRNA:   3'- cGGCUAUUu-GGGUgUUGGCACGGUAg -5'
29164 5' -51.1 NC_006150.1 + 152906 0.66 0.997411
Target:  5'- uGCCGG---ACCCGCugGACgCGUGaCUAUCc -3'
miRNA:   3'- -CGGCUauuUGGGUG--UUG-GCAC-GGUAG- -5'
29164 5' -51.1 NC_006150.1 + 154839 0.66 0.997411
Target:  5'- aCCGGgcacguucuGGCCCucGCGgccGCCGUGCuCAUCg -3'
miRNA:   3'- cGGCUau-------UUGGG--UGU---UGGCACG-GUAG- -5'
29164 5' -51.1 NC_006150.1 + 161335 0.68 0.991413
Target:  5'- uGgCGGUAAaugGCCCGCAAUgGcUGCCAa- -3'
miRNA:   3'- -CgGCUAUU---UGGGUGUUGgC-ACGGUag -5'
29164 5' -51.1 NC_006150.1 + 165801 0.71 0.955912
Target:  5'- -aCGAUGAACUCGCuGCCGaaGCCAUg -3'
miRNA:   3'- cgGCUAUUUGGGUGuUGGCa-CGGUAg -5'
29164 5' -51.1 NC_006150.1 + 169734 0.66 0.997815
Target:  5'- aGgCGGUAAGucaaaucaucgUCCACGACCGUcCCGUUa -3'
miRNA:   3'- -CgGCUAUUU-----------GGGUGUUGGCAcGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 170117 0.72 0.923028
Target:  5'- uGCCGAUuggguCCCAggUGACCGUGCCc-- -3'
miRNA:   3'- -CGGCUAuuu--GGGU--GUUGGCACGGuag -5'
29164 5' -51.1 NC_006150.1 + 171333 0.68 0.990203
Target:  5'- cCCGAUAAuACaggCACAGCUGUugacuGCCAUCu -3'
miRNA:   3'- cGGCUAUU-UGg--GUGUUGGCA-----CGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 196723 0.69 0.979923
Target:  5'- aGCC----AGCaCCACAGCCGUaGCCGUa -3'
miRNA:   3'- -CGGcuauUUG-GGUGUUGGCA-CGGUAg -5'
29164 5' -51.1 NC_006150.1 + 216740 0.67 0.995123
Target:  5'- uGCuCGcgAAACCCACGACaaGUGgUGUCg -3'
miRNA:   3'- -CG-GCuaUUUGGGUGUUGg-CACgGUAG- -5'
29164 5' -51.1 NC_006150.1 + 217174 0.71 0.947714
Target:  5'- aGCCGugccuGACCCGCGACCGcagcGCCc-- -3'
miRNA:   3'- -CGGCuau--UUGGGUGUUGGCa---CGGuag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.