miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29164 5' -51.1 NC_006150.1 + 3795 0.69 0.979923
Target:  5'- aCCGA--GACCCGCAACaacauGUGCCu-- -3'
miRNA:   3'- cGGCUauUUGGGUGUUGg----CACGGuag -5'
29164 5' -51.1 NC_006150.1 + 4311 0.69 0.975144
Target:  5'- -aUGAUAAACCCGCcacACUGUGgCUGUCg -3'
miRNA:   3'- cgGCUAUUUGGGUGu--UGGCAC-GGUAG- -5'
29164 5' -51.1 NC_006150.1 + 4524 1.13 0.007408
Target:  5'- cGCCGAUAAACCCACAACCGUGCCAUCu -3'
miRNA:   3'- -CGGCUAUUUGGGUGUUGGCACGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 10492 0.66 0.996946
Target:  5'- cUCGGUGuGCCCgccauGCGAUCGuUGUCAUCg -3'
miRNA:   3'- cGGCUAUuUGGG-----UGUUGGC-ACGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 30870 0.66 0.997815
Target:  5'- cGCaUGGcAAACuCCAUGACCGUGUCAg- -3'
miRNA:   3'- -CG-GCUaUUUG-GGUGUUGGCACGGUag -5'
29164 5' -51.1 NC_006150.1 + 35251 0.67 0.9949
Target:  5'- aGCCGGUGAAgcuucucaauguguCCCugAuaccgcACCGUGaCCGUg -3'
miRNA:   3'- -CGGCUAUUU--------------GGGugU------UGGCAC-GGUAg -5'
29164 5' -51.1 NC_006150.1 + 47499 0.71 0.947714
Target:  5'- uGCCGAUGuggacauucGACCCGCAcaACCGU-CC-UCa -3'
miRNA:   3'- -CGGCUAU---------UUGGGUGU--UGGCAcGGuAG- -5'
29164 5' -51.1 NC_006150.1 + 62438 0.75 0.822803
Target:  5'- uUCGAUcAAACCCACAGCCGauucggGCCAc- -3'
miRNA:   3'- cGGCUA-UUUGGGUGUUGGCa-----CGGUag -5'
29164 5' -51.1 NC_006150.1 + 86894 0.66 0.99714
Target:  5'- cGCUGuuuuuACUaCACAugcgcacgcggauaaACCGUGCCGUCg -3'
miRNA:   3'- -CGGCuauu-UGG-GUGU---------------UGGCACGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 88504 0.69 0.975144
Target:  5'- cCCGAcGAGCCCugGACgcaGUGCUggAUCg -3'
miRNA:   3'- cGGCUaUUUGGGugUUGg--CACGG--UAG- -5'
29164 5' -51.1 NC_006150.1 + 91394 0.68 0.988864
Target:  5'- -aCGAUGAGCCC-CAggauacACCGaUGCCuUCg -3'
miRNA:   3'- cgGCUAUUUGGGuGU------UGGC-ACGGuAG- -5'
29164 5' -51.1 NC_006150.1 + 101319 0.7 0.96319
Target:  5'- cGCCGA--GACCCGCGaugcGCCGagGCCuggCa -3'
miRNA:   3'- -CGGCUauUUGGGUGU----UGGCa-CGGua-G- -5'
29164 5' -51.1 NC_006150.1 + 101574 0.66 0.997815
Target:  5'- aGCCGGuUAAACgCCACAAaggaCGgaaagGCCcgCa -3'
miRNA:   3'- -CGGCU-AUUUG-GGUGUUg---GCa----CGGuaG- -5'
29164 5' -51.1 NC_006150.1 + 103270 0.7 0.96319
Target:  5'- gGCCGGUGAcgGCagCGgGACCGUGCUAa- -3'
miRNA:   3'- -CGGCUAUU--UGg-GUgUUGGCACGGUag -5'
29164 5' -51.1 NC_006150.1 + 104136 0.66 0.996415
Target:  5'- uGCCGcagAAGCCCAUguuGGCCGcacucgucaUGCCAa- -3'
miRNA:   3'- -CGGCua-UUUGGGUG---UUGGC---------ACGGUag -5'
29164 5' -51.1 NC_006150.1 + 111245 0.66 0.997411
Target:  5'- uCCGAauugGGGCCCAUcGCCGgcaaaGUCAUCc -3'
miRNA:   3'- cGGCUa---UUUGGGUGuUGGCa----CGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 114555 0.72 0.917362
Target:  5'- gGCUGAgccguCCCACAGCU--GCCAUCa -3'
miRNA:   3'- -CGGCUauuu-GGGUGUUGGcaCGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 115257 0.67 0.995809
Target:  5'- cGCCGGUGguucguccGGCCC-CGACuagCGUGCUcuGUCa -3'
miRNA:   3'- -CGGCUAU--------UUGGGuGUUG---GCACGG--UAG- -5'
29164 5' -51.1 NC_006150.1 + 118159 0.67 0.995809
Target:  5'- uGCCGAccGACCCG--GCUGUGgCCAg- -3'
miRNA:   3'- -CGGCUauUUGGGUguUGGCAC-GGUag -5'
29164 5' -51.1 NC_006150.1 + 122584 0.69 0.977627
Target:  5'- cGCUGGUuccuGGCcacaCCACGuuucguggcacuACCGUGCCGUCc -3'
miRNA:   3'- -CGGCUAu---UUG----GGUGU------------UGGCACGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.