miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29164 5' -51.1 NC_006150.1 + 62438 0.75 0.822803
Target:  5'- uUCGAUcAAACCCACAGCCGauucggGCCAc- -3'
miRNA:   3'- cGGCUA-UUUGGGUGUUGGCa-----CGGUag -5'
29164 5' -51.1 NC_006150.1 + 216740 0.67 0.995123
Target:  5'- uGCuCGcgAAACCCACGACaaGUGgUGUCg -3'
miRNA:   3'- -CG-GCuaUUUGGGUGUUGg-CACgGUAG- -5'
29164 5' -51.1 NC_006150.1 + 129755 0.67 0.995123
Target:  5'- cCCGAUcgugauccaaGAcuguCCCGCGGCCGUGaccgaCGUCa -3'
miRNA:   3'- cGGCUA----------UUu---GGGUGUUGGCACg----GUAG- -5'
29164 5' -51.1 NC_006150.1 + 115257 0.67 0.995809
Target:  5'- cGCCGGUGguucguccGGCCC-CGACuagCGUGCUcuGUCa -3'
miRNA:   3'- -CGGCUAU--------UUGGGuGUUG---GCACGG--UAG- -5'
29164 5' -51.1 NC_006150.1 + 140321 0.66 0.996896
Target:  5'- cCUGGUGAAUgcucuugCCGCGGCaCGUGCCGa- -3'
miRNA:   3'- cGGCUAUUUG-------GGUGUUG-GCACGGUag -5'
29164 5' -51.1 NC_006150.1 + 131921 0.66 0.996946
Target:  5'- cGCCGGccuguUGGGCgaCgACGGCCuUGCCGUCg -3'
miRNA:   3'- -CGGCU-----AUUUG--GgUGUUGGcACGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 152906 0.66 0.997411
Target:  5'- uGCCGG---ACCCGCugGACgCGUGaCUAUCc -3'
miRNA:   3'- -CGGCUauuUGGGUG--UUG-GCAC-GGUAG- -5'
29164 5' -51.1 NC_006150.1 + 169734 0.66 0.997815
Target:  5'- aGgCGGUAAGucaaaucaucgUCCACGACCGUcCCGUUa -3'
miRNA:   3'- -CgGCUAUUU-----------GGGUGUUGGCAcGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 30870 0.66 0.997815
Target:  5'- cGCaUGGcAAACuCCAUGACCGUGUCAg- -3'
miRNA:   3'- -CG-GCUaUUUG-GGUGUUGGCACGGUag -5'
29164 5' -51.1 NC_006150.1 + 35251 0.67 0.9949
Target:  5'- aGCCGGUGAAgcuucucaauguguCCCugAuaccgcACCGUGaCCGUg -3'
miRNA:   3'- -CGGCUAUUU--------------GGGugU------UGGCAC-GGUAg -5'
29164 5' -51.1 NC_006150.1 + 149905 0.68 0.991413
Target:  5'- cGCCGAUGGGuCUCugGaaGCCG-GCCAc- -3'
miRNA:   3'- -CGGCUAUUU-GGGugU--UGGCaCGGUag -5'
29164 5' -51.1 NC_006150.1 + 127979 0.75 0.822803
Target:  5'- -aUGAUGAACCaggucuuGCCGUGCCGUCg -3'
miRNA:   3'- cgGCUAUUUGGgugu---UGGCACGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 47499 0.71 0.947714
Target:  5'- uGCCGAUGuggacauucGACCCGCAcaACCGU-CC-UCa -3'
miRNA:   3'- -CGGCUAU---------UUGGGUGU--UGGCAcGGuAG- -5'
29164 5' -51.1 NC_006150.1 + 165801 0.71 0.955912
Target:  5'- -aCGAUGAACUCGCuGCCGaaGCCAUg -3'
miRNA:   3'- cgGCUAUUUGGGUGuUGGCa-CGGUAg -5'
29164 5' -51.1 NC_006150.1 + 103270 0.7 0.96319
Target:  5'- gGCCGGUGAcgGCagCGgGACCGUGCUAa- -3'
miRNA:   3'- -CGGCUAUU--UGg-GUgUUGGCACGGUag -5'
29164 5' -51.1 NC_006150.1 + 4311 0.69 0.975144
Target:  5'- -aUGAUAAACCCGCcacACUGUGgCUGUCg -3'
miRNA:   3'- cgGCUAUUUGGGUGu--UGGCAC-GGUAG- -5'
29164 5' -51.1 NC_006150.1 + 88504 0.69 0.975144
Target:  5'- cCCGAcGAGCCCugGACgcaGUGCUggAUCg -3'
miRNA:   3'- cGGCUaUUUGGGugUUGg--CACGG--UAG- -5'
29164 5' -51.1 NC_006150.1 + 196723 0.69 0.979923
Target:  5'- aGCC----AGCaCCACAGCCGUaGCCGUa -3'
miRNA:   3'- -CGGcuauUUG-GGUGUUGGCA-CGGUAg -5'
29164 5' -51.1 NC_006150.1 + 3795 0.69 0.979923
Target:  5'- aCCGA--GACCCGCAACaacauGUGCCu-- -3'
miRNA:   3'- cGGCUauUUGGGUGUUGg----CACGGuag -5'
29164 5' -51.1 NC_006150.1 + 101574 0.66 0.997815
Target:  5'- aGCCGGuUAAACgCCACAAaggaCGgaaagGCCcgCa -3'
miRNA:   3'- -CGGCU-AUUUG-GGUGUUg---GCa----CGGuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.