miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29164 5' -51.1 NC_006150.1 + 149905 0.68 0.991413
Target:  5'- cGCCGAUGGGuCUCugGaaGCCG-GCCAc- -3'
miRNA:   3'- -CGGCUAUUU-GGGugU--UGGCaCGGUag -5'
29164 5' -51.1 NC_006150.1 + 171333 0.68 0.990203
Target:  5'- cCCGAUAAuACaggCACAGCUGUugacuGCCAUCu -3'
miRNA:   3'- cGGCUAUU-UGg--GUGUUGGCA-----CGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 91394 0.68 0.988864
Target:  5'- -aCGAUGAGCCC-CAggauacACCGaUGCCuUCg -3'
miRNA:   3'- cgGCUAUUUGGGuGU------UGGC-ACGGuAG- -5'
29164 5' -51.1 NC_006150.1 + 196723 0.69 0.979923
Target:  5'- aGCC----AGCaCCACAGCCGUaGCCGUa -3'
miRNA:   3'- -CGGcuauUUG-GGUGUUGGCA-CGGUAg -5'
29164 5' -51.1 NC_006150.1 + 3795 0.69 0.979923
Target:  5'- aCCGA--GACCCGCAACaacauGUGCCu-- -3'
miRNA:   3'- cGGCUauUUGGGUGUUGg----CACGGuag -5'
29164 5' -51.1 NC_006150.1 + 122584 0.69 0.977627
Target:  5'- cGCUGGUuccuGGCcacaCCACGuuucguggcacuACCGUGCCGUCc -3'
miRNA:   3'- -CGGCUAu---UUG----GGUGU------------UGGCACGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 148614 0.69 0.975144
Target:  5'- cGCgGAacGGCCCGCuuACCGU-CCGUCu -3'
miRNA:   3'- -CGgCUauUUGGGUGu-UGGCAcGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 88504 0.69 0.975144
Target:  5'- cCCGAcGAGCCCugGACgcaGUGCUggAUCg -3'
miRNA:   3'- cGGCUaUUUGGGugUUGg--CACGG--UAG- -5'
29164 5' -51.1 NC_006150.1 + 4311 0.69 0.975144
Target:  5'- -aUGAUAAACCCGCcacACUGUGgCUGUCg -3'
miRNA:   3'- cgGCUAUUUGGGUGu--UGGCAC-GGUAG- -5'
29164 5' -51.1 NC_006150.1 + 130613 0.7 0.969584
Target:  5'- gGCCGGgauuuGGCCUugGACCGUGUagaCAUg -3'
miRNA:   3'- -CGGCUau---UUGGGugUUGGCACG---GUAg -5'
29164 5' -51.1 NC_006150.1 + 101319 0.7 0.96319
Target:  5'- cGCCGA--GACCCGCGaugcGCCGagGCCuggCa -3'
miRNA:   3'- -CGGCUauUUGGGUGU----UGGCa-CGGua-G- -5'
29164 5' -51.1 NC_006150.1 + 103270 0.7 0.96319
Target:  5'- gGCCGGUGAcgGCagCGgGACCGUGCUAa- -3'
miRNA:   3'- -CGGCUAUU--UGg-GUgUUGGCACGGUag -5'
29164 5' -51.1 NC_006150.1 + 165801 0.71 0.955912
Target:  5'- -aCGAUGAACUCGCuGCCGaaGCCAUg -3'
miRNA:   3'- cgGCUAUUUGGGUGuUGGCa-CGGUAg -5'
29164 5' -51.1 NC_006150.1 + 217174 0.71 0.947714
Target:  5'- aGCCGugccuGACCCGCGACCGcagcGCCc-- -3'
miRNA:   3'- -CGGCuau--UUGGGUGUUGGCa---CGGuag -5'
29164 5' -51.1 NC_006150.1 + 47499 0.71 0.947714
Target:  5'- uGCCGAUGuggacauucGACCCGCAcaACCGU-CC-UCa -3'
miRNA:   3'- -CGGCUAU---------UUGGGUGU--UGGCAcGGuAG- -5'
29164 5' -51.1 NC_006150.1 + 170117 0.72 0.923028
Target:  5'- uGCCGAUuggguCCCAggUGACCGUGCCc-- -3'
miRNA:   3'- -CGGCUAuuu--GGGU--GUUGGCACGGuag -5'
29164 5' -51.1 NC_006150.1 + 114555 0.72 0.917362
Target:  5'- gGCUGAgccguCCCACAGCU--GCCAUCa -3'
miRNA:   3'- -CGGCUauuu-GGGUGUUGGcaCGGUAG- -5'
29164 5' -51.1 NC_006150.1 + 152571 0.73 0.871032
Target:  5'- aUCGGUAAucCCCAgAGCCGUGUCGUa -3'
miRNA:   3'- cGGCUAUUu-GGGUgUUGGCACGGUAg -5'
29164 5' -51.1 NC_006150.1 + 62438 0.75 0.822803
Target:  5'- uUCGAUcAAACCCACAGCCGauucggGCCAc- -3'
miRNA:   3'- cGGCUA-UUUGGGUGUUGGCa-----CGGUag -5'
29164 5' -51.1 NC_006150.1 + 220354 0.75 0.822803
Target:  5'- gGCCGucc--UCCACAACCGUGCCu-- -3'
miRNA:   3'- -CGGCuauuuGGGUGUUGGCACGGuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.