Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29169 | 5' | -58.2 | NC_006150.1 | + | 59744 | 1.1 | 0.002566 |
Target: 5'- uGGACGCGCGGGAGAUCGCCAAGCGACc -3' miRNA: 3'- -CCUGCGCGCCCUCUAGCGGUUCGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 181271 | 0.76 | 0.374645 |
Target: 5'- cGGACGCggaggGCGGGAGAggcggcUGCCcuGGGCGGCg -3' miRNA: 3'- -CCUGCG-----CGCCCUCUa-----GCGG--UUCGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 221137 | 0.76 | 0.398536 |
Target: 5'- gGGGCGUGCGGGAGAcguaCGgCAGGCaGCu -3' miRNA: 3'- -CCUGCGCGCCCUCUa---GCgGUUCGcUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 94076 | 0.71 | 0.627623 |
Target: 5'- gGGACGUGUuucaGGAGAUCGCUAGGaaACa -3' miRNA: 3'- -CCUGCGCGc---CCUCUAGCGGUUCgcUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 137818 | 0.71 | 0.637398 |
Target: 5'- aGGGCGCugaGUGGaGAGGcgCGgCAGGCGGCg -3' miRNA: 3'- -CCUGCG---CGCC-CUCUa-GCgGUUCGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 220278 | 0.7 | 0.695714 |
Target: 5'- -cACGCGgGGGAGGUCuCCAAugccGUGGCg -3' miRNA: 3'- ccUGCGCgCCCUCUAGcGGUU----CGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 70940 | 0.7 | 0.695714 |
Target: 5'- aGGGCG-GCGGaGcGAUCGUCAuucGCGGCg -3' miRNA: 3'- -CCUGCgCGCC-CuCUAGCGGUu--CGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 1737 | 0.69 | 0.752273 |
Target: 5'- gGGugGCGgcggaGGGGGGUUGgCG-GCGGCa -3' miRNA: 3'- -CCugCGCg----CCCUCUAGCgGUuCGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 87847 | 0.69 | 0.77044 |
Target: 5'- cGGCGCcgucCGGGcaAUCGCCAguGGCGACc -3' miRNA: 3'- cCUGCGc---GCCCucUAGCGGU--UCGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 148971 | 0.68 | 0.796827 |
Target: 5'- -cACGUGCGGGAGAaggCGCCcugGAGCc-- -3' miRNA: 3'- ccUGCGCGCCCUCUa--GCGG---UUCGcug -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 1030 | 0.68 | 0.796827 |
Target: 5'- cGGCGCGCaggcaGGcGAGGguggccugaCGCUAGGCGGCg -3' miRNA: 3'- cCUGCGCG-----CC-CUCUa--------GCGGUUCGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 49824 | 0.68 | 0.821994 |
Target: 5'- -uGCGCGaCGGGAGAuUCGC---GCGGCu -3' miRNA: 3'- ccUGCGC-GCCCUCU-AGCGguuCGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 66095 | 0.68 | 0.821994 |
Target: 5'- uGGACGCuauGGAGGUCGCCAcuccaGACg -3' miRNA: 3'- -CCUGCGcgcCCUCUAGCGGUucg--CUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 37829 | 0.68 | 0.830078 |
Target: 5'- aGGAgaaugcCGUGCaGGGGGG--GCCAAGCGAg -3' miRNA: 3'- -CCU------GCGCG-CCCUCUagCGGUUCGCUg -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 114098 | 0.68 | 0.830078 |
Target: 5'- uGGAacggGUGCuGGAGGUCGCUggGCuGAa -3' miRNA: 3'- -CCUg---CGCGcCCUCUAGCGGuuCG-CUg -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 132996 | 0.68 | 0.830078 |
Target: 5'- aGACGCGCGGacGAGccugcacauAUCGCCcuGCGcCa -3' miRNA: 3'- cCUGCGCGCC--CUC---------UAGCGGuuCGCuG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 182606 | 0.68 | 0.837997 |
Target: 5'- -aGCGCaGCGGGuGGUCGCaCAGGagggaGGCc -3' miRNA: 3'- ccUGCG-CGCCCuCUAGCG-GUUCg----CUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 113904 | 0.68 | 0.837997 |
Target: 5'- gGGAC-CGCGGGGccUCGCCA-GCcGCa -3' miRNA: 3'- -CCUGcGCGCCCUcuAGCGGUuCGcUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 88516 | 0.68 | 0.837997 |
Target: 5'- uGGACGCaGUGcuGGAUCGggaCAGGCGGCu -3' miRNA: 3'- -CCUGCG-CGCccUCUAGCg--GUUCGCUG- -5' |
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29169 | 5' | -58.2 | NC_006150.1 | + | 88588 | 0.67 | 0.845746 |
Target: 5'- cGGAUGC-CGGcuccagcGAUCGCCgAAGCGAUu -3' miRNA: 3'- -CCUGCGcGCCcu-----CUAGCGG-UUCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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