miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29169 5' -58.2 NC_006150.1 + 181271 0.76 0.374645
Target:  5'- cGGACGCggaggGCGGGAGAggcggcUGCCcuGGGCGGCg -3'
miRNA:   3'- -CCUGCG-----CGCCCUCUa-----GCGG--UUCGCUG- -5'
29169 5' -58.2 NC_006150.1 + 108851 0.66 0.912669
Target:  5'- uGGugGUGCGGGcGuUgGCUcucGGCGGCc -3'
miRNA:   3'- -CCugCGCGCCCuCuAgCGGu--UCGCUG- -5'
29169 5' -58.2 NC_006150.1 + 183924 0.66 0.906904
Target:  5'- cGGC-CGUGGGAGAaUGUCcuccgcGAGCGGCa -3'
miRNA:   3'- cCUGcGCGCCCUCUaGCGG------UUCGCUG- -5'
29169 5' -58.2 NC_006150.1 + 174909 0.67 0.881724
Target:  5'- -uGCGCGCGaGGAGAcUCGUCuaGAGuUGGCa -3'
miRNA:   3'- ccUGCGCGC-CCUCU-AGCGG--UUC-GCUG- -5'
29169 5' -58.2 NC_006150.1 + 180508 0.67 0.853318
Target:  5'- aGGACGCGgGGGuagAGAggGCCuAGCa-- -3'
miRNA:   3'- -CCUGCGCgCCC---UCUagCGGuUCGcug -5'
29169 5' -58.2 NC_006150.1 + 88588 0.67 0.845746
Target:  5'- cGGAUGC-CGGcuccagcGAUCGCCgAAGCGAUu -3'
miRNA:   3'- -CCUGCGcGCCcu-----CUAGCGG-UUCGCUG- -5'
29169 5' -58.2 NC_006150.1 + 88516 0.68 0.837997
Target:  5'- uGGACGCaGUGcuGGAUCGggaCAGGCGGCu -3'
miRNA:   3'- -CCUGCG-CGCccUCUAGCg--GUUCGCUG- -5'
29169 5' -58.2 NC_006150.1 + 132996 0.68 0.830078
Target:  5'- aGACGCGCGGacGAGccugcacauAUCGCCcuGCGcCa -3'
miRNA:   3'- cCUGCGCGCC--CUC---------UAGCGGuuCGCuG- -5'
29169 5' -58.2 NC_006150.1 + 114098 0.68 0.830078
Target:  5'- uGGAacggGUGCuGGAGGUCGCUggGCuGAa -3'
miRNA:   3'- -CCUg---CGCGcCCUCUAGCGGuuCG-CUg -5'
29169 5' -58.2 NC_006150.1 + 37829 0.68 0.830078
Target:  5'- aGGAgaaugcCGUGCaGGGGGG--GCCAAGCGAg -3'
miRNA:   3'- -CCU------GCGCG-CCCUCUagCGGUUCGCUg -5'
29169 5' -58.2 NC_006150.1 + 221137 0.76 0.398536
Target:  5'- gGGGCGUGCGGGAGAcguaCGgCAGGCaGCu -3'
miRNA:   3'- -CCUGCGCGCCCUCUa---GCgGUUCGcUG- -5'
29169 5' -58.2 NC_006150.1 + 94076 0.71 0.627623
Target:  5'- gGGACGUGUuucaGGAGAUCGCUAGGaaACa -3'
miRNA:   3'- -CCUGCGCGc---CCUCUAGCGGUUCgcUG- -5'
29169 5' -58.2 NC_006150.1 + 137818 0.71 0.637398
Target:  5'- aGGGCGCugaGUGGaGAGGcgCGgCAGGCGGCg -3'
miRNA:   3'- -CCUGCG---CGCC-CUCUa-GCgGUUCGCUG- -5'
29169 5' -58.2 NC_006150.1 + 220278 0.7 0.695714
Target:  5'- -cACGCGgGGGAGGUCuCCAAugccGUGGCg -3'
miRNA:   3'- ccUGCGCgCCCUCUAGcGGUU----CGCUG- -5'
29169 5' -58.2 NC_006150.1 + 70940 0.7 0.695714
Target:  5'- aGGGCG-GCGGaGcGAUCGUCAuucGCGGCg -3'
miRNA:   3'- -CCUGCgCGCC-CuCUAGCGGUu--CGCUG- -5'
29169 5' -58.2 NC_006150.1 + 87847 0.69 0.77044
Target:  5'- cGGCGCcgucCGGGcaAUCGCCAguGGCGACc -3'
miRNA:   3'- cCUGCGc---GCCCucUAGCGGU--UCGCUG- -5'
29169 5' -58.2 NC_006150.1 + 66095 0.68 0.821994
Target:  5'- uGGACGCuauGGAGGUCGCCAcuccaGACg -3'
miRNA:   3'- -CCUGCGcgcCCUCUAGCGGUucg--CUG- -5'
29169 5' -58.2 NC_006150.1 + 119800 0.66 0.906315
Target:  5'- gGGGCcgcaGCGCGGuaGAGcgCGCCAAagacgccGCGAa -3'
miRNA:   3'- -CCUG----CGCGCC--CUCuaGCGGUU-------CGCUg -5'
29169 5' -58.2 NC_006150.1 + 1737 0.69 0.752273
Target:  5'- gGGugGCGgcggaGGGGGGUUGgCG-GCGGCa -3'
miRNA:   3'- -CCugCGCg----CCCUCUAGCgGUuCGCUG- -5'
29169 5' -58.2 NC_006150.1 + 148971 0.68 0.796827
Target:  5'- -cACGUGCGGGAGAaggCGCCcugGAGCc-- -3'
miRNA:   3'- ccUGCGCGCCCUCUa--GCGG---UUCGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.