Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29169 | 5' | -58.2 | NC_006150.1 | + | 87847 | 0.69 | 0.77044 |
|
Target: 5'- cGGCGCcgucCGGGcaAUCGCCAguGGCGACc -3' miRNA: 3'- cCUGCGc---GCCCucUAGCGGU--UCGCUG- -5' |
|||||||
| 29169 | 5' | -58.2 | NC_006150.1 | + | 1737 | 0.69 | 0.752273 |
|
Target: 5'- gGGugGCGgcggaGGGGGGUUGgCG-GCGGCa -3' miRNA: 3'- -CCugCGCg----CCCUCUAGCgGUuCGCUG- -5' |
|||||||
| 29169 | 5' | -58.2 | NC_006150.1 | + | 220278 | 0.7 | 0.695714 |
|
Target: 5'- -cACGCGgGGGAGGUCuCCAAugccGUGGCg -3' miRNA: 3'- ccUGCGCgCCCUCUAGcGGUU----CGCUG- -5' |
|||||||
| 29169 | 5' | -58.2 | NC_006150.1 | + | 70940 | 0.7 | 0.695714 |
|
Target: 5'- aGGGCG-GCGGaGcGAUCGUCAuucGCGGCg -3' miRNA: 3'- -CCUGCgCGCC-CuCUAGCGGUu--CGCUG- -5' |
|||||||
| 29169 | 5' | -58.2 | NC_006150.1 | + | 137818 | 0.71 | 0.637398 |
|
Target: 5'- aGGGCGCugaGUGGaGAGGcgCGgCAGGCGGCg -3' miRNA: 3'- -CCUGCG---CGCC-CUCUa-GCgGUUCGCUG- -5' |
|||||||
| 29169 | 5' | -58.2 | NC_006150.1 | + | 94076 | 0.71 | 0.627623 |
|
Target: 5'- gGGACGUGUuucaGGAGAUCGCUAGGaaACa -3' miRNA: 3'- -CCUGCGCGc---CCUCUAGCGGUUCgcUG- -5' |
|||||||
| 29169 | 5' | -58.2 | NC_006150.1 | + | 221137 | 0.76 | 0.398536 |
|
Target: 5'- gGGGCGUGCGGGAGAcguaCGgCAGGCaGCu -3' miRNA: 3'- -CCUGCGCGCCCUCUa---GCgGUUCGcUG- -5' |
|||||||
| 29169 | 5' | -58.2 | NC_006150.1 | + | 181271 | 0.76 | 0.374645 |
|
Target: 5'- cGGACGCggaggGCGGGAGAggcggcUGCCcuGGGCGGCg -3' miRNA: 3'- -CCUGCG-----CGCCCUCUa-----GCGG--UUCGCUG- -5' |
|||||||
| 29169 | 5' | -58.2 | NC_006150.1 | + | 59744 | 1.1 | 0.002566 |
|
Target: 5'- uGGACGCGCGGGAGAUCGCCAAGCGACc -3' miRNA: 3'- -CCUGCGCGCCCUCUAGCGGUUCGCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home