miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2917 3' -59 NC_001493.1 + 63234 0.68 0.678856
Target:  5'- aCACCGUGGUGAccaccgcacCGGCgacgCCCgCGGgaGCCa -3'
miRNA:   3'- cGUGGCACCACU---------GCCG----GGGaGUC--UGG- -5'
2917 3' -59 NC_001493.1 + 63280 0.68 0.648972
Target:  5'- gGCACCGUGGUGAccaccacacCGGCgaugCCCgCGGGa- -3'
miRNA:   3'- -CGUGGCACCACU---------GCCG----GGGaGUCUgg -5'
2917 3' -59 NC_001493.1 + 63370 0.69 0.589058
Target:  5'- cGCACCGUGGUGAccaccacacCGGCgaugCCCaCGggagcGACCg -3'
miRNA:   3'- -CGUGGCACCACU---------GCCG----GGGaGU-----CUGG- -5'
2917 3' -59 NC_001493.1 + 63584 0.72 0.450046
Target:  5'- uCGCCGUGGUGAuauucgcggugucguUGGCUCCcgCGGGCa -3'
miRNA:   3'- cGUGGCACCACU---------------GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 63755 0.66 0.774802
Target:  5'- uCACCGcGGUGucguUGGCUCCcgCGGGCg -3'
miRNA:   3'- cGUGGCaCCACu---GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 63800 0.66 0.774802
Target:  5'- uCACCGcGGUGucguUGGCUCCcgCGGGCg -3'
miRNA:   3'- cGUGGCaCCACu---GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 63842 0.68 0.678856
Target:  5'- aCACCGUGGUGAccaccacacCGGCgaugCCCgCGGgaGCCa -3'
miRNA:   3'- cGUGGCACCACU---------GCCG----GGGaGUC--UGG- -5'
2917 3' -59 NC_001493.1 + 63870 0.73 0.398252
Target:  5'- cGUGCCGUGGUGAuauucgcggugucguUGGCUCCcgCGGGCg -3'
miRNA:   3'- -CGUGGCACCACU---------------GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 63913 0.72 0.450046
Target:  5'- uCGCCGUGGUGAuauucgcggugucguUGGCUCCcgCGGGCg -3'
miRNA:   3'- cGUGGCACCACU---------------GCCGGGGa-GUCUGg -5'
2917 3' -59 NC_001493.1 + 69467 0.67 0.737405
Target:  5'- uGCACUGUacgGGCGcGCCagCCUCGGACUc -3'
miRNA:   3'- -CGUGGCAccaCUGC-CGG--GGAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 69663 0.66 0.783868
Target:  5'- gGCGCgGUGGUGGaaaaGGUCCggaUgAGACUc -3'
miRNA:   3'- -CGUGgCACCACUg---CCGGGg--AgUCUGG- -5'
2917 3' -59 NC_001493.1 + 78896 0.67 0.737405
Target:  5'- cCGCCGUcagcauucggGGUauGcCGGCCUCggUCAGACCg -3'
miRNA:   3'- cGUGGCA----------CCA--CuGCCGGGG--AGUCUGG- -5'
2917 3' -59 NC_001493.1 + 87660 0.7 0.569252
Target:  5'- cGC-CCGUGGaGcCGGCUCCUCGuacGCCg -3'
miRNA:   3'- -CGuGGCACCaCuGCCGGGGAGUc--UGG- -5'
2917 3' -59 NC_001493.1 + 90415 0.72 0.437626
Target:  5'- aGCGCCGUcGUGACGGUCUCgcucaacaCGGGCUu -3'
miRNA:   3'- -CGUGGCAcCACUGCCGGGGa-------GUCUGG- -5'
2917 3' -59 NC_001493.1 + 93949 0.68 0.668921
Target:  5'- aGC-CCGUGGUcACGGCCUCgucgUAGuacGCCc -3'
miRNA:   3'- -CGuGGCACCAcUGCCGGGGa---GUC---UGG- -5'
2917 3' -59 NC_001493.1 + 94908 0.68 0.658956
Target:  5'- cGCACaCGguggGGUGAagaucaCGguccucaaggaGCCCCUCGGGCUg -3'
miRNA:   3'- -CGUG-GCa---CCACU------GC-----------CGGGGAGUCUGG- -5'
2917 3' -59 NC_001493.1 + 95900 0.69 0.628973
Target:  5'- cGUACCgGUGGccGGCGGUCCgCUC-GACUa -3'
miRNA:   3'- -CGUGG-CACCa-CUGCCGGG-GAGuCUGG- -5'
2917 3' -59 NC_001493.1 + 96376 0.66 0.774802
Target:  5'- uCACCGUcGGUGAUGGUacuaCCCgUC-GACUa -3'
miRNA:   3'- cGUGGCA-CCACUGCCG----GGG-AGuCUGG- -5'
2917 3' -59 NC_001493.1 + 99351 0.66 0.765614
Target:  5'- uCACCGUGaGcGACGGacaCCUCGGuuCCa -3'
miRNA:   3'- cGUGGCAC-CaCUGCCgg-GGAGUCu-GG- -5'
2917 3' -59 NC_001493.1 + 107296 0.66 0.792804
Target:  5'- cGCGCCGUGGaacUGA--GCCUC-CAGGCg -3'
miRNA:   3'- -CGUGGCACC---ACUgcCGGGGaGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.